RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 SPTLC1O15269 473 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 TCP1P17987 556 aaKnown RBP17.94■□□□□ 0.46
CLN3-252ENST00000636907 LRPAP1P30533 357 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 CXCR5P32302 372 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 DNA2P51530 1060 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 PEX26Q7Z412 305 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 NT5DC3Q86UY8 548 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 PHF13Q86YI8 300 aaPredicted RBP17.94■□□□□ 0.46
CLN3-252ENST00000636907 FAM126BQ8IXS8 530 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 C1orf131Q8NDD1 294 aaKnown RBP17.94■□□□□ 0.46
CLN3-252ENST00000636907 ZNF564Q8TBZ8 553 aaPredicted RBP17.94■□□□□ 0.46
CLN3-252ENST00000636907 TRIM11Q96F44 468 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 CALR3Q96L12 384 aaKnown RBP17.94■□□□□ 0.46
CLN3-252ENST00000636907 RPS6KC1Q96S38 1066 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 C11orf70Q9BRQ4 267 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 SEZ6LQ9BYH1 1024 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 ABCB6Q9NP58 842 aa17.94■□□□□ 0.46
CLN3-252ENST00000636907 ARL5CA6NH57 179 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 EFCAB8A8MWE9 144 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 MED7O43513 233 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 KIF4AO95239 1232 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 LSM8O95777 96 aaKnown RBP17.93■□□□□ 0.46
CLN3-252ENST00000636907 MYBL1P10243 752 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 IBSPP21815 317 aaPredicted RBP17.93■□□□□ 0.46
CLN3-252ENST00000636907 RRM1P23921 792 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 CDH5P33151 784 aaPredicted RBP17.93■□□□□ 0.46
CLN3-252ENST00000636907 PNPLA4P41247 253 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 TAF6P49848 677 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 PTP4A2Q12974 167 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 RPS6KA1Q15418 735 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 PPP1R2P3Q6NXS1 205 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 DENND1BQ6P3S1 775 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 PHLDB2Q86SQ0 1253 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 CREG2Q8IUH2 290 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 WDTC1Q8N5D0 677 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 RNF169Q8NCN4 708 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 CAGE1Q8TC20 777 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 AVENQ9NQS1 362 aaPredicted RBP17.93■□□□□ 0.46
CLN3-252ENST00000636907 ADAM22Q9P0K1 906 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 UVRAGQ9P2Y5 699 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 NME7Q9Y5B8 376 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 KPNA7A9QM74 516 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 PDE2AO00408 941 aaPredicted RBP17.93■□□□□ 0.46
CLN3-252ENST00000636907 THP07101 528 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 SCNN1GP51170 649 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 SOWAHAQ2M3V2 549 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 ERCC6LQ2NKX8 1250 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 C11orf63Q6NUN7 778 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 LLGL2Q6P1M3 1020 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 MMS22LQ6ZRQ5 1243 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 LRRC8DQ7L1W4 858 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 TMEM35BQ8NCS4 154 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 VCPIP1Q96JH7 1222 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 NT5C1AQ9BXI3 368 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 SLC38A7Q9NVC3 462 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 GDAP2Q9NXN4 497 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 AMFRQ9UKV5 643 aa17.93■□□□□ 0.46
CLN3-252ENST00000636907 VDRP11473 427 aa17.92■□□□□ 0.46
CLN3-252ENST00000636907 MMP8P22894 467 aa17.92■□□□□ 0.46
CLN3-252ENST00000636907 C1QBPQ07021 282 aaKnown RBP17.92■□□□□ 0.46
CLN3-252ENST00000636907 SV2CQ496J9 727 aa17.92■□□□□ 0.46
CLN3-252ENST00000636907 RSRC2Q7L4I2 434 aaKnown RBP17.92■□□□□ 0.46
CLN3-252ENST00000636907 BTBD6Q96KE9 485 aa17.92■□□□□ 0.46
CLN3-252ENST00000636907 HEXIM2Q96MH2 286 aaKnown RBP17.92■□□□□ 0.46
CLN3-252ENST00000636907 ZNF518BQ9C0D4 1074 aa17.92■□□□□ 0.46
CLN3-252ENST00000636907 RSAD1Q9HA92 442 aa17.92■□□□□ 0.46
CLN3-252ENST00000636907 CTAGE15A4D2H0 777 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 TMEM110-MUSTN1A8MSY1 372 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 CTAGE8P0CG41 777 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 SKIP12755 728 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 SELPP16109 830 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 LILRA4P59901 499 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 CKAP4Q07065 602 aaKnown RBP17.91■□□□□ 0.46
CLN3-252ENST00000636907 SGO2Q562F6 1265 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 LIN9Q5TKA1 542 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 CTAGE6Q86UF2 777 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 RTN4RL1Q86UN2 441 aaPredicted RBP17.91■□□□□ 0.46
CLN3-252ENST00000636907 ECHDC2Q86YB7 292 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 CTAGE4Q8IX94 777 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 LINC01599Q8WXQ3 324 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 GOLGA1Q92805 767 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 PGBD4Q96DM1 585 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 HES6Q96HZ4 224 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 LHX5Q9H2C1 402 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 TSPYL2Q9H2G4 693 aaPredicted RBP17.91■□□□□ 0.46
CLN3-252ENST00000636907 RGS18Q9NS28 235 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 CACNG4Q9UBN1 327 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 CEP83Q9Y592 693 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 ALG6Q9Y672 507 aa17.91■□□□□ 0.46
CLN3-252ENST00000636907 O00370 1275 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 MICAL2O94851 1124 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 IGFBP6P24592 240 aaPredicted RBP17.9■□□□□ 0.46
CLN3-252ENST00000636907 BFSP2Q13515 415 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 MESDQ14696 234 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 ELF2Q15723 593 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 LIMS2Q7Z4I7 341 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 ZNF598Q86UK7 904 aaKnown RBP17.9■□□□□ 0.46
CLN3-252ENST00000636907 OR6B3Q8NGW1 331 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 KBTBD7Q8WVZ9 684 aa17.9■□□□□ 0.46
CLN3-252ENST00000636907 UBXN4Q92575 508 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms