RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PCDHGC3Q9UN70 934 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLN3-251ENST00000636853 GOLGA6CA6NDK9 693 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 A6NJR5 290 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 FSCN2O14926 492 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 IVLP07476 585 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 GOLGA6DP0CG33 693 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 TTMPQ5BVD1 217 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 ZNF410Q86VK4 478 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 RASAL3Q86YV0 1011 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 CCDC105Q8IYK2 499 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 KAT2BQ92831 832 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 MCEEQ96PE7 176 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 CXCL16Q9H2A7 254 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 RASSF4Q9H2L5 321 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 GOLGA6AQ9NYA3 693 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 RASAL2Q9UJF2 1139 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 AGAP1Q9UPQ3 857 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 PLAAQ9Y263 795 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 TRIP11Q15643 1979 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 ZNF236Q9UL36 1845 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 RRN3P2A6NIE6 340 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 CALB1P05937 261 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 CYP2B6P20813 491 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 SNX1Q13596 522 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 DNAJC24Q6P3W2 148 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 TLK2Q86UE8 772 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 ERICH1Q86X53 443 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 CCDC50Q8IVM0 306 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 RHOT1Q8IXI2 618 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 HEMGNQ9BXL5 484 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 ADAMTS10Q9H324 1103 aa16.59■□□□□ 0.25
CLN3-251ENST00000636853 TCRBV5S1A1TA0A578 114 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 TMEM191CA6NGB0 347 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 GOLGA8KD6RF30 607 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 NPTXRO95502 500 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 ITGBL1O95965 494 aaPredicted RBP16.58■□□□□ 0.25
CLN3-251ENST00000636853 F2P00734 622 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 ZNF865P0CJ78 1059 aaPredicted RBP16.58■□□□□ 0.25
CLN3-251ENST00000636853 TCF4P15884 667 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 EIF4BP23588 611 aaKnown RBP16.58■□□□□ 0.25
CLN3-251ENST00000636853 CDH5P33151 784 aaPredicted RBP16.58■□□□□ 0.25
CLN3-251ENST00000636853 ACTN2P35609 894 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 ZNF252P-AS1Q0IIN9 211 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 HIC1Q14526 733 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 SGO2Q562F6 1265 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 ATG4AQ8WYN0 398 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 LRRC45Q96CN5 670 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 HPDLQ96IR7 371 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 FMO2Q99518 471 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 OSMRQ99650 979 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 ZNF518BQ9C0D4 1074 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 ELOVL4Q9GZR5 314 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 ZDHHC18Q9NUE0 388 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 TJP2Q9UDY2 1190 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 IP6K2Q9UHH9 426 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 CEP83Q9Y592 693 aa16.58■□□□□ 0.25
CLN3-251ENST00000636853 PSTPIP1O43586 416 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 GPR32O75388 356 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 RPL21P46778 160 aaKnown RBP16.58■□□□□ 0.24
CLN3-251ENST00000636853 PLTPP55058 493 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 OGDHQ02218 1023 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 DHX9Q08211 1270 aaKnown RBP16.58■□□□□ 0.24
CLN3-251ENST00000636853 KYAT1Q16773 422 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 RUFY4Q6ZNE9 571 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 TMC3Q7Z5M5 1100 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 SLC4A11Q8NBS3 891 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 OR2W6PQ8NHA6 318 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 UBLCP1Q8WVY7 318 aaPredicted RBP16.58■□□□□ 0.24
CLN3-251ENST00000636853 KIF12Q96FN5 646 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 CHST7Q9NS84 486 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 KLHL11Q9NVR0 708 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 DPP3Q9NY33 737 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 CYTH4Q9UIA0 394 aa16.58■□□□□ 0.24
CLN3-251ENST00000636853 NRCAMQ92823 1304 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 RALAP11233 206 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 HOXA11P31270 313 aaPredicted RBP16.57■□□□□ 0.24
CLN3-251ENST00000636853 ATICP31939 592 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 ATP13A4Q4VNC1 1196 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 KCTD16Q68DU8 428 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 DCUN1D2Q6PH85 259 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 ZDHHC24Q6UX98 284 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 CATSPER4Q7RTX7 472 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 FAM76AQ8TAV0 307 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 GCOM2Q9BZD3 368 aaPredicted RBP16.57■□□□□ 0.24
CLN3-251ENST00000636853 LRRC19Q9H756 370 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 SNTG2Q9NY99 539 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 TRIP12Q14669 1992 aaPredicted RBP16.57■□□□□ 0.24
CLN3-251ENST00000636853 F8VP50 259 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 PODXLO00592 558 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 CYP2C9P11712 490 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 GRM5P41594 1212 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 MFSD10Q14728 455 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 PTPN20Q4JDL3 420 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 ANKS1BQ7Z6G8 1248 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 C12orf50Q8NA57 414 aaPredicted RBP16.57■□□□□ 0.24
CLN3-251ENST00000636853 FBXO25Q8TCJ0 367 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 EIF2AQ9BY44 585 aaKnown RBP16.57■□□□□ 0.24
CLN3-251ENST00000636853 GRHL1Q9NZI5 618 aa16.57■□□□□ 0.24
CLN3-251ENST00000636853 C2CD2Q9Y426 696 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms