RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 STRIP2Q9ULQ0 834 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 TFR2Q9UP52 801 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 ARL5CA6NH57 179 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 EFCAB8A8MWE9 144 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 KPNA7A9QM74 516 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 DYNC1I1O14576 645 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 PALMO75781 387 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 THP07101 528 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 SETSIPP0DME0 302 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 VDRP11473 427 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 CD58P19256 250 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 AKAP5P24588 427 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 MLH1P40692 756 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 RAD23BP54727 409 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 NAP1L1P55209 391 aaKnown RBP11.25□□□□□ -0.61
CLN3-248ENST00000636355 MEI1Q5TIA1 1274 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 ZNF598Q86UK7 904 aaKnown RBP11.25□□□□□ -0.61
CLN3-248ENST00000636355 MCOLN2Q8IZK6 566 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 TMEM86AQ8N2M4 240 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 SLC35G2Q8TBE7 412 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 TMEM176AQ96HP8 235 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 ZNF333Q96JL9 665 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 DEFB118Q96PH6 123 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 APOL6Q9BWW8 343 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 TRPV6Q9H1D0 765 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 ELAC1Q9H777 363 aaKnown RBP11.25□□□□□ -0.61
CLN3-248ENST00000636355 MRPL47Q9HD33 250 aaKnown RBP11.25□□□□□ -0.61
CLN3-248ENST00000636355 RGS18Q9NS28 235 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 TAS2R14Q9NYV8 317 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 POLIQ9UNA4 740 aa11.25□□□□□ -0.61
CLN3-248ENST00000636355 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.25□□□□□ -0.61
CLN3-248ENST00000636355 UQCRHLA0A096LP55 91 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 C9IYK1 514 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 BUB1O43683 1085 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 TADA3O75528 432 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 ATP1A1P05023 1023 aaKnown RBP11.24□□□□□ -0.61
CLN3-248ENST00000636355 UQCRHP07919 91 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 WEE2P0C1S8 567 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 ABCB4P21439 1286 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 MMP8P22894 467 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 NOP2P46087 812 aaKnown RBP11.24□□□□□ -0.61
CLN3-248ENST00000636355 AARSP49588 968 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLN3-248ENST00000636355 SNX16P57768 344 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 CNGA2Q16280 664 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 SGO2Q562F6 1265 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 GLRA4Q5JXX5 417 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 NAA35Q5VZE5 725 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 AGMOQ6ZNB7 445 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 SLC24A5Q71RS6 500 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 DAAM2Q86T65 1068 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 ECHDC2Q86YB7 292 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 SLC4A11Q8NBS3 891 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 APPL2Q8NEU8 664 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 ZNF564Q8TBZ8 553 aaPredicted RBP11.24□□□□□ -0.61
CLN3-248ENST00000636355 WHAMMQ8TF30 809 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 C18orf25Q96B23 403 aaPredicted RBP11.24□□□□□ -0.61
CLN3-248ENST00000636355 ADAM2Q99965 735 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 TLR10Q9BXR5 811 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 SDCBP2Q9H190 292 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 ABCB6Q9NP58 842 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 ACP6Q9NPH0 428 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 CYLDQ9NQC7 956 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 CTTNBP2NLQ9P2B4 639 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 WDR35Q9P2L0 1181 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 SNX9Q9Y5X1 595 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 TTC3P53804 2025 aa11.24□□□□□ -0.61
CLN3-248ENST00000636355 PATJQ8NI35 1801 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 TMCO5BA8MYB1 307 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 TMEM189-UBE2V1I3L0A0 370 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 O00370 1275 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 HOXA2O43364 376 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 MGEA5O60502 916 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 BUB1BO60566 1050 aaPredicted RBP11.23□□□□□ -0.61
CLN3-248ENST00000636355 HUS1O60921 280 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 KIF4AO95239 1232 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 WARSP23381 471 aaKnown RBP11.23□□□□□ -0.61
CLN3-248ENST00000636355 BRD2P25440 801 aaKnown RBP11.23□□□□□ -0.61
CLN3-248ENST00000636355 MAN1A1P33908 653 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 SLC1A1P43005 524 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 GUCY2FP51841 1108 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 LILRA4P59901 499 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 SOX4Q06945 474 aaPredicted RBP11.23□□□□□ -0.61
CLN3-248ENST00000636355 MBTPS1Q14703 1052 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 MTFR1Q15390 333 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 PLEKHG4Q58EX7 1191 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 ARHGAP17Q68EM7 881 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 PLEKHA7Q6IQ23 1121 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 LCLAT1Q6UWP7 414 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 GLB1LQ6UWU2 654 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 PEX26Q7Z412 305 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 NT5DC3Q86UY8 548 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 C3orf20Q8ND61 904 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 GSTCDQ8NEC7 633 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 STK32AQ8WU08 396 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 RUBCNQ92622 972 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 ARHGEF26Q96DR7 871 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 HES6Q96HZ4 224 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 PBKQ96KB5 322 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 TNIP3Q96KP6 325 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 ZFP42Q96MM3 310 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms