RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CLSTN3Q9BQT9 956 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 PI4K2AQ9BTU6 479 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 TSPY26PQ9H489 355 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 FBXL5Q9UKA1 691 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 CDY1Q9Y6F8 540 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 FAM163BP0C2L3 166 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 LHX1P48742 406 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 SPOPLQ6IQ16 392 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 ELMSAN1Q6PJG2 1045 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 SCARA5Q6ZMJ2 495 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 DHX40Q8IX18 779 aaKnown RBP20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 NIF3L1Q9GZT8 377 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 SNX25Q9H3E2 840 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 CBX8Q9HC52 389 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 POLIQ9UNA4 740 aa20.47■□□□□ 0.87
SQSTM1-216ENST00000626660 TACC1O75410 805 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 GLUD1P00367 558 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 C1RP00736 705 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 CPB1P15086 417 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 WARSP23381 471 aaKnown RBP20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 PCSK1P29120 753 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 GTF2F1P35269 517 aaKnown RBP eCLIP20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 ARPP19P56211 112 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 VWA3BQ502W6 1294 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 SLC8B1Q6J4K2 584 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 LLGL2Q6P1M3 1020 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 EP400NLQ6ZTU2 488 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 LIMS2Q7Z4I7 341 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 PALB2Q86YC2 1186 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 FAM200AQ8TCP9 573 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 FAXDC2Q96IV6 333 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 NDST4Q9H3R1 872 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 TAB2Q9NYJ8 693 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 DPP7Q9UHL4 492 aa20.46■□□□□ 0.87
SQSTM1-216ENST00000626660 PLXNA3P51805 1871 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 MTCL1Q9Y4B5 1905 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 ADAM12O43184 909 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 TBC1D4O60343 1298 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 ZNF18P17022 549 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 CLCN4P51793 760 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 TSPY1Q01534 308 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 RAB33AQ14088 237 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 IQCB1Q15051 598 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 KRT31Q15323 416 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 RSPO2Q6UXX9 243 aaPredicted RBP20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 GBP6Q6ZN66 633 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 CASP10Q92851 521 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 ELMO3Q96BJ8 720 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 NT5C1BQ96P26 610 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 SMYD3Q9H7B4 428 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 CYP3A43Q9HB55 503 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 APOBEC3GQ9HC16 384 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 DDX43Q9NXZ2 648 aaKnown RBP20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 CLDND1Q9NY35 253 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 GCNT4Q9P109 453 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 HCFC2Q9Y5Z7 792 aa20.45■□□□□ 0.86
SQSTM1-216ENST00000626660 GTPBP10A4D1E9 387 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 SPDYE4A6NLX3 237 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 GOLGA6L19H0YKK7 550 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 GABRDO14764 452 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 GNL1P36915 607 aaPredicted RBP20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 ROR1Q01973 937 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 ADAM15Q13444 863 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 EHBP1Q8NDI1 1231 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 OR6B3Q8NGW1 331 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 SLC22A17Q8WUG5 538 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 KBTBD7Q8WVZ9 684 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 PABPC5Q96DU9 382 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 MRPL45Q9BRJ2 306 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 INTS2Q9H0H0 1204 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 PRDM6Q9NQX0 595 aa20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 LIMA1Q9UHB6 759 aaKnown RBP20.44■□□□□ 0.86
SQSTM1-216ENST00000626660 TGM5O43548 720 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 LRRN2O75325 713 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 EPCAMP16422 314 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 ASPAP45381 313 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 ZNF445P59923 1031 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 LRMPQ12912 555 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 MIIPQ5JXC2 388 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 TPGS2Q68CL5 300 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 OSTM1Q86WC4 334 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 DCP1BQ8IZD4 617 aaKnown RBP20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 OR10T2Q8NGX3 314 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 RTP3Q9BQQ7 232 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 ACBD6Q9BR61 282 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 BCO2Q9BYV7 579 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 DNAI2Q9GZS0 605 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 VPS16Q9H269 839 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 DZANK1Q9NVP4 752 aa20.43■□□□□ 0.86
SQSTM1-216ENST00000626660 A8MXQ7 604 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 LINC01565O15544 149 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 TRIM21P19474 475 aaKnown RBP20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 TBXAS1P24557 533 aaPredicted RBP20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 ELF1P32519 619 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 RAP1GAPP47736 663 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 COPB1P53618 953 aaKnown RBP20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 CDH8P55286 799 aa20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 YWHAEP62258 255 aaKnown RBP20.42■□□□□ 0.86
SQSTM1-216ENST00000626660 SMARCB1Q12824 385 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms