RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ZNF512BQ96KM6 892 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 EIF2AK1Q9BQI3 630 aaKnown RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 GTF3C4Q9UKN8 822 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 USP32Q8NFA0 1604 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 PPLO60437 1756 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 SHOX2O60902 331 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 P4HBP07237 508 aaKnown RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 SLC45A4Q5BKX6 768 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 ZBTB33Q86T24 672 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 ZNF398Q8TD17 642 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 FAM213AQ9BRX8 229 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 RMI1Q9H9A7 625 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 TBC1D22BQ9NU19 505 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 SOX13Q9UN79 622 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 INPP5FQ9Y2H2 1132 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 INO80B-WBP1J3KQ70 363 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 TDP2O95551 362 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 PTDSS1P48651 473 aaKnown RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 ITGA9Q13797 1035 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 LBRQ14739 615 aaKnown RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 MEA1Q16626 185 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 TBC1D10BQ4KMP7 808 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 C7orf31Q8N865 590 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 CALML6Q8TD86 181 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 PRCCQ92733 491 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 TMEM79Q9BSE2 394 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 INO80BQ9C086 356 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 RAD21L1Q9H4I0 556 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 POLE3Q9NRF9 147 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 ARHGAP20Q9P2F6 1191 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 NAALADL1Q9UQQ1 740 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 USP17L5A8MUK1 530 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 TRIM49D1C9J1S8 452 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 DRD4P21917 467 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 GRK2P25098 689 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 ATP1A4Q13733 1029 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 EFL1Q7Z2Z2 1120 aaKnown RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 TLK2Q86UE8 772 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.3□□□□□ -0.92
VCL-206ENST00000623461 CKAP2Q8WWK9 683 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 PPP1R14BQ96C90 147 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 EHD4Q9H223 541 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 IL25Q9H293 177 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 TCN1P20061 433 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 PARP6Q2NL67 630 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 DEPDC1Q5TB30 811 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.3□□□□□ -0.92
VCL-206ENST00000623461 RUBCNLQ9H714 662 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 A0A087WXM4 84 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 DYTNA2CJ06 578 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 CCDC78A2IDD5 438 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 TBX3O15119 743 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 LCA5LO95447 670 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 MTERF2Q49AM1 385 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 ARMCX4Q5H9R4 360 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 TTC27Q6P3X3 843 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 NANOGNBQ7Z5D8 188 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 CCDC60Q8IWA6 550 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 RMDN1Q96DB5 314 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 TMEM2Q9UHN6 1383 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 ABCC3O15438 1527 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 APRTP07741 180 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 CRB1P82279 1406 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 KLF6Q99612 283 aaPredicted RBP9.3□□□□□ -0.92
VCL-206ENST00000623461 MAD2L2Q9UI95 211 aa9.3□□□□□ -0.92
VCL-206ENST00000623461 FAM205CA6NFA0 338 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 TRIM24O15164 1050 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SLC16A4O15374 487 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 ERVK-9P63128 1117 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 XIAPP98170 497 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 TNFAIP2Q03169 654 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 HDAC7Q8WUI4 952 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SNX19Q92543 992 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 E9PCH4 1651 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 ST13P50502 369 aaKnown RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 KRT76Q01546 638 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 KRT72Q14CN4 511 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SPOUT1Q5T280 376 aaKnown RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 ACAD10Q6JQN1 1059 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 METTL23Q86XA0 190 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 GLMNQ92990 594 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 OMA1Q96E52 524 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 OXNAD1Q96HP4 312 aaPredicted RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 TASP1Q9H6P5 420 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 RSAD1Q9HA92 442 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 HMG20AQ9NP66 347 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 DENND3A2RUS2 1198 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 C21orf2O43822 256 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 LZTS3O60299 673 aaPredicted RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 SFNP31947 248 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 GPC3P51654 580 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 AQP5P55064 265 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 CDK16Q00536 496 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 C11orf63Q6NUN7 778 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 ACTL7BQ9Y614 415 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SPDYE2BA6NHP3 402 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 SPDYE6P0CI01 402 aa9.29□□□□□ -0.92
VCL-206ENST00000623461 RPL5P46777 297 aaKnown RBP9.29□□□□□ -0.92
VCL-206ENST00000623461 NSUN2Q08J23 767 aaKnown RBP eCLIP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms