RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PPANQ9NQ55 473 aaKnown RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 PARVAQ9NVD7 372 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 DOCK3Q8IZD9 2030 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 SIP14410 1827 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 H3BRB1 525 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 TP73O15350 636 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 ERLIN2O94905 339 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 SNAI1O95863 264 aaPredicted RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 CHKAP35790 457 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 CYP1B1Q16678 543 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 ZNF792Q3KQV3 632 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 KCNT1Q5JUK3 1230 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 RHOT1Q8IXI2 618 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 EMC1Q8N766 993 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 UBR7Q8N806 425 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 MDM1Q8TC05 714 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 BRI3BPQ8WY22 251 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 TRIM11Q96F44 468 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 MS4A4AQ96JQ5 239 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 FAM49AQ9H0Q0 323 aaPredicted RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 TUT1Q9H6E5 874 aaKnown RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 LRRC19Q9H756 370 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 LAMA2P24043 3122 aaKnown RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 HTTP42858 3142 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 FOXO6A8MYZ6 492 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 HMGB1P1B2RPK0 211 aaPredicted RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 ADCY6O43306 1168 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 ACSL3O95573 720 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 SLC1A1P43005 524 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 MTMR3Q13615 1198 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 KIZQ2M2Z5 673 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 DNAJC24Q6P3W2 148 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 ERICH1Q86X53 443 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 KIAA0319LQ8IZA0 1049 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 KCNN1Q92952 543 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 L3MBTL3Q96JM7 780 aaPredicted RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 PLVAPQ9BX97 442 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 OSBPL8Q9BZF1 889 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 PABPC3Q9H361 631 aaKnown RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 C10orf88Q9H8K7 445 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.26□□□□□ -0.613e-7■■■■■ 27.8
CUX1-221ENST00000622516 SAE1Q9UBE0 346 aaPredicted RBP11.26□□□□□ -0.61
CUX1-221ENST00000622516 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 KAT6AQ92794 2004 aa11.26□□□□□ -0.61
CUX1-221ENST00000622516 GLTPD2A6NH11 291 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 TRIM66O15016 1216 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 SMPD1P17405 629 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 LSP1P33241 339 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 RFC1P35251 1148 aaPredicted RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 C1QBPQ07021 282 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 LAMC2Q13753 1193 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 CLUL1Q15846 466 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 DENND2CQ68D51 928 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 LRIG3Q6UXM1 1119 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 KDM7AQ6ZMT4 941 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 TRIM72Q6ZMU5 477 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 GLIS1Q8NBF1 620 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 EPS8L3Q8TE67 593 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 C16orf70Q9BSU1 422 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 DCLK3Q9C098 648 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 SETD4Q9NVD3 440 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 TNFSF13BQ9Y275 285 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 HES2Q9Y543 173 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 TMEM191CA6NGB0 347 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 GAS2O43903 313 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 PPFIA4O75335 1185 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 GH1P01241 217 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 ZSCAN5DPP0CG00 497 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 POLR2BP30876 1174 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 ADCY8P40145 1251 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 SLC26A2P50443 739 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 IFI35P80217 286 aaPredicted RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 SKOR1P84550 965 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 CALCOCO2Q13137 446 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 AMHR2Q16671 573 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 SLC10A6Q3KNW5 377 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 PTPN20Q4JDL3 420 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 CCDC38Q502W7 563 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 ZNF667Q5HYK9 610 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 HP1BP3Q5SSJ5 553 aaPredicted RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 MFSD7Q6UXD7 560 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 TMEM35BQ8NCS4 154 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 JOSD2Q8TAC2 188 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 UBA3Q8TBC4 463 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 RAPGEF5Q92565 580 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 PDZD7Q9H5P4 517 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 ZWILCHQ9H900 591 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 GEMIN8Q9NWZ8 242 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 PNMA3Q9UL41 463 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 B4GALT4O60513 344 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 IVLP07476 585 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 ETS1P14921 441 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 PHKA2P46019 1235 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 FNTAP49354 379 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 AP3M2P53677 418 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 DRG2P55039 364 aaKnown RBP11.25□□□□□ -0.61
CUX1-221ENST00000622516 DYNLT1P63172 113 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 GSTA5Q7RTV2 222 aa11.25□□□□□ -0.61
CUX1-221ENST00000622516 TAB3Q8N5C8 712 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms