RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 DAAM1Q9Y4D1 1078 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 GOLGA6BA6NDN3 693 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 MIF4GDA9UHW6 222 aaKnown RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 ASS1P00966 412 aaKnown RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 GNL1P36915 607 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 CLEC16AQ2KHT3 1053 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 PRDM5Q9NQX1 630 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 SEPT4O43236 478 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 VNN1O95497 513 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 GZMAP12544 262 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 ADCY8P40145 1251 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 MLH1P40692 756 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 PTPN11Q06124 597 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 MSL3Q8N5Y2 521 aaKnown RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 C1orf127Q8N9H9 656 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 UVRAGQ9P2Y5 699 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 MTRF1LQ9UGC7 380 aaKnown RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 ATAD5Q96QE3 1844 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 TAF6P49848 677 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 CACNB2Q08289 660 aaPredicted RBP16.66■□□□□ 0.26
CPSF1-213ENST00000620219 GOLGA7BQ2TAP0 167 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 RFX6Q8HWS3 928 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 SCN4BQ8IWT1 228 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 KCTD6Q8NC69 237 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 SH3TC2Q8TF17 1288 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 FBXL18Q96ME1 805 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 CACNG4Q9UBN1 327 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 TUBGCP4Q9UGJ1 667 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 SNX24Q9Y343 169 aa16.66■□□□□ 0.26
CPSF1-213ENST00000620219 CD4P01730 458 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 SLC10A6Q3KNW5 377 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 CAPN12Q6ZSI9 719 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 SMIM35A0A1B0GVV1 85 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 GPR182O15218 404 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 IQCF3P0C7M6 154 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 KCNJ1P48048 391 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 CARSP49589 748 aaKnown RBP16.65■□□□□ 0.26
CPSF1-213ENST00000620219 FBXO47Q5MNV8 452 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 KCTD16Q68DU8 428 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 ADAM2Q99965 735 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 MCM3APO60318 1980 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 I3L4J1 428 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 SART1O43290 800 aaKnown RBP16.65■□□□□ 0.26
CPSF1-213ENST00000620219 ADCY6O43306 1168 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 KPNA6O60684 536 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 GAS8O95995 478 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 CPNE8Q86YQ8 564 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 C12orf29Q8N999 325 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 PPP1R12CQ9BZL4 782 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 TRMT13Q9NUP7 481 aaKnown RBP16.65■□□□□ 0.26
CPSF1-213ENST00000620219 RNF186Q9NXI6 227 aa16.65■□□□□ 0.26
CPSF1-213ENST00000620219 LCA5LO95447 670 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 ZNF865P0CJ78 1059 aaPredicted RBP16.64■□□□□ 0.26
CPSF1-213ENST00000620219 MYBL2P10244 700 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 MARCKSL1P49006 195 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 MRPS6P82932 125 aaKnown RBP16.64■□□□□ 0.26
CPSF1-213ENST00000620219 MCOLN2Q8IZK6 566 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.64■□□□□ 0.26
CPSF1-213ENST00000620219 TMEM176AQ96HP8 235 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 TRIM7Q9C029 511 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 INTUQ9ULD6 942 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 TRPV2Q9Y5S1 764 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 DOCK5Q9H7D0 1870 aa16.64■□□□□ 0.26
CPSF1-213ENST00000620219 RAD51CO43502 376 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 PRPSAP2O60256 369 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 DR1Q01658 176 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 RAB17Q9H0T7 212 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 FAN1Q9Y2M0 1017 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 PCDHGC5Q9Y5F6 944 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 F2P00734 622 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 OR1G1P47890 313 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 SCNN1GP51170 649 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 KCNT1Q5JUK3 1230 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 HOOK3Q86VS8 718 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 ZNF677Q86XU0 584 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 KRT35Q92764 455 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 TRIM51Q9BSJ1 452 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 METTL5Q9NRN9 209 aaKnown RBP16.64■□□□□ 0.25
CPSF1-213ENST00000620219 STRIP2Q9ULQ0 834 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 COL1A2P08123 1366 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 CNTNAP2Q9UHC6 1331 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 THP07101 528 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 BCAR1P56945 870 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 ITGA7Q13683 1181 aa16.64■□□□□ 0.25
CPSF1-213ENST00000620219 TTI1O43156 1089 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 PDGFRAP16234 1089 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 DEFB128Q7Z7B8 93 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 RNF39Q9H2S5 420 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 CYB561D2O14569 222 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 BEND6Q5SZJ8 279 aaPredicted RBP16.63■□□□□ 0.25
CPSF1-213ENST00000620219 MORN1Q5T089 497 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 USP38Q8NB14 1042 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 LMO3Q8TAP4 145 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 FUT8Q9BYC5 575 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 CCDC66A2RUB6 948 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 HMGCRP04035 888 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 GLI1P08151 1106 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 MYBL1P10243 752 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 TRADDQ15628 312 aa16.63■□□□□ 0.25
CPSF1-213ENST00000620219 ARRDC4Q8NCT1 418 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms