RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CATSPER2Q96P56 530 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 NUP85Q9BW27 656 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 DCLK3Q9C098 648 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 GLT8D2Q9H1C3 349 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 ZDHHC7Q9NXF8 308 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 GTF3C4Q9UKN8 822 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 SSX2IPQ9Y2D8 614 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 WASF2Q9Y6W5 498 aa11.41□□□□□ -0.58
UPF3A-212ENST00000619079 FOXN3O00409 490 aaPredicted RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 TM9SF1O15321 606 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 CYP1A2P05177 515 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 RPL26P61254 145 aaKnown RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 MAP3K10Q02779 954 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 SLC1A5Q15758 541 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 CFAP157Q5JU67 520 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 IZUMO3Q5VZ72 239 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 CYP4F22Q6NT55 531 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 ADGRG6Q86SQ4 1221 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 TMPRSS6Q8IU80 811 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 ZNF513Q8N8E2 541 aaPredicted RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 TGFBRAP1Q8WUH2 860 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 SLC20A1Q8WUM9 679 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 VPS11Q9H270 941 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 DCTN4Q9UJW0 460 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 UBE4BO95155 1302 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 A0A0G2JND7 137 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 NDC80O14777 642 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 OPHN1O60890 802 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 LRRN2O75325 713 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 FKBP6O75344 327 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 NFIAQ12857 509 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 CDC16Q13042 620 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 PPP2R5CQ13362 524 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 MED21Q13503 144 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 PKN2Q16513 984 aaKnown RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 PLEKHG4Q58EX7 1191 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 STXBP4Q6ZWJ1 553 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 NOP9Q86U38 636 aaKnown RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 RNF168Q8IYW5 571 aaPredicted RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 C4orf33Q8N1A6 199 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 ALKBH8Q96BT7 664 aaKnown RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 DYDC2Q96IM9 177 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 PHACTR1Q9C0D0 580 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 CHST7Q9NS84 486 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 PSMC3IPQ9P2W1 217 aaPredicted RBP11.4□□□□□ -0.58
UPF3A-212ENST00000619079 ADAMTSL1Q8N6G6 1762 aa11.4□□□□□ -0.58
UPF3A-212ENST00000619079 PNMA6FA0A0J9YX94 578 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 TGFB1I1O43294 461 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 RRM1P23921 792 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 RPA1P27694 616 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 GCAP28676 217 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 SLC1A1P43005 524 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 RHBDL3P58872 404 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 PPP4CP60510 307 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ARHGAP4P98171 946 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ASPHQ12797 758 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 PABPC4Q13310 644 aaKnown RBP eCLIP11.39□□□□□ -0.59
UPF3A-212ENST00000619079 GRM2Q14416 872 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 TRIP13Q15645 432 aaPredicted RBP11.39□□□□□ -0.59
UPF3A-212ENST00000619079 DNAL1Q4LDG9 190 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 CBWD6Q4V339 395 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 CBWD3Q5JTY5 395 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 CBWD5Q5RIA9 395 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 MAP3K21Q5TCX8 1036 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 RINLQ6ZS11 566 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 MYLK4Q86YV6 388 aaPredicted RBP11.39□□□□□ -0.59
UPF3A-212ENST00000619079 MAPKAPK5Q8IW41 473 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 LRRC43Q8N309 656 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 SLC44A5Q8NCS7 719 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 GFM2Q969S9 779 aaKnown RBP11.39□□□□□ -0.59
UPF3A-212ENST00000619079 FAM161BQ96MY7 647 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 GLIS2Q9BZE0 524 aaPredicted RBP11.39□□□□□ -0.59
UPF3A-212ENST00000619079 DEFB129Q9H1M3 183 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 FETUBQ9UGM5 382 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ADM5C9JUS6 153 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 POC1B-GALNT4F8VUJ3 575 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 PIK3CDO00329 1044 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 EML1O00423 815 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ATP6V1G1O75348 118 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 TOMM70O94826 608 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 FAM163BP0C2L3 166 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 SERPINB3P29508 390 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ACTR3P61158 418 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 SULT2A1Q06520 285 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 RASA3Q14644 834 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 UBE2SQ16763 222 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 C1QTNF12Q5T7M4 302 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 AAGABQ6PD74 315 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 MOXD1Q6UVY6 613 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ANKRD23Q86SG2 305 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 CATSPER3Q86XQ3 398 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 TRIM42Q8IWZ5 723 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ALDH16A1Q8IZ83 802 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ZNF653Q96CK0 615 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 DGCR14Q96DF8 476 aaKnown RBP11.39□□□□□ -0.59
UPF3A-212ENST00000619079 RANBP17Q9H2T7 1088 aaKnown RBP11.39□□□□□ -0.59
UPF3A-212ENST00000619079 ZNF408Q9H9D4 720 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 KANSL3Q9P2N6 904 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 NEU2Q9Y3R4 380 aa11.39□□□□□ -0.59
UPF3A-212ENST00000619079 USP17L5A8MUK1 530 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms