RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 SIX5Q8N196 739 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 OR5B17Q8NGF7 314 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 FNBP1Q96RU3 617 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 CYP4F11Q9HBI6 524 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 INTS13Q9NVM9 706 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 DSEQ9UL01 958 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 R4GN57 208 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 DMXL1Q9Y485 3027 aa17.23■□□□□ 0.35
BRCA1-228ENST00000618469 EP300Q09472 2414 aaPredicted RBP17.22■□□□□ 0.35
BRCA1-228ENST00000618469 KPNA7A9QM74 516 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 LRG1P02750 347 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 NTHL1P78549 312 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 ADCY1Q08828 1119 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 KCNB1Q14721 858 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 PSMD6Q15008 389 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 UVSSAQ2YD98 709 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 RNF19BQ6ZMZ0 732 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 METTL23Q86XA0 190 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 CCDC105Q8IYK2 499 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 CSGALNACT2Q8N6G5 542 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 LRRC52Q8N7C0 313 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 DTWD2Q8NBA8 298 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 CCDC127Q96BQ5 260 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 PGLYRP2Q96PD5 576 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 CGRRF1Q99675 332 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 OXCT2Q9BYC2 517 aaPredicted RBP17.22■□□□□ 0.35
BRCA1-228ENST00000618469 KCTD10Q9H3F6 313 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 AFF4Q9UHB7 1163 aaKnown RBP17.22■□□□□ 0.35
BRCA1-228ENST00000618469 SIX4Q9UIU6 781 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 R3HCC1Q9Y3T6 440 aaKnown RBP17.22■□□□□ 0.35
BRCA1-228ENST00000618469 INSL5Q9Y5Q6 135 aa17.22■□□□□ 0.35
BRCA1-228ENST00000618469 CACNA1AO00555 2505 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 N4BP1O75113 896 aaKnown RBP17.21■□□□□ 0.35
BRCA1-228ENST00000618469 KIF20AO95235 890 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 SEC24AO95486 1093 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 CYP11A1P05108 521 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 POU2F2P09086 479 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 TNNI1P19237 187 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 AOC1P19801 751 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 RBP5P82980 135 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 SNW1Q13573 536 aaKnown RBP17.21■□□□□ 0.35
BRCA1-228ENST00000618469 WSCD1Q658N2 575 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 SCARA3Q6AZY7 606 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 RTL10Q7L3V2 364 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 TCEAL8Q8IYN2 117 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 PLCD3Q8N3E9 789 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 ENGASEQ8NFI3 743 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 OR10T2Q8NGX3 314 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 CXorf38Q8TB03 319 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 RSAD2Q8WXG1 361 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 TMEM209Q96SK2 561 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 HCFC1R1Q9NWW0 138 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 MAPK8IP1Q9UQF2 711 aa17.21■□□□□ 0.35
BRCA1-228ENST00000618469 DOCK8Q8NF50 2099 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 DOCK6Q96HP0 2047 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 PDXKO00764 312 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 NR3C1P04150 777 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 CFHP08603 1231 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 FSHRP23945 695 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 MYBPC2Q14324 1141 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 DUOXA2Q1HG44 320 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 PABPC1LQ4VXU2 614 aaKnown RBP17.2■□□□□ 0.34
BRCA1-228ENST00000618469 ST13P5Q8NFI4 369 aaPredicted RBP17.2■□□□□ 0.34
BRCA1-228ENST00000618469 BORCS6Q96GS4 357 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 MYADMQ96S97 322 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 CHMP5Q9NZZ3 219 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 YIPF1Q9Y548 306 aa17.2■□□□□ 0.34
BRCA1-228ENST00000618469 MTMR11A4FU01 709 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 CALUO43852 315 aaPredicted RBP17.19■□□□□ 0.34
BRCA1-228ENST00000618469 PRPF40AO75400 957 aaKnown RBP17.19■□□□□ 0.34
BRCA1-228ENST00000618469 KRT37O76014 449 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 TWF1Q12792 350 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 MYO1EQ12965 1108 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 GPR17Q13304 367 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 TDGQ13569 410 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 SLC39A12Q504Y0 691 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 DGLUCYQ7Z3D6 616 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 SMYD4Q8IYR2 804 aaPredicted RBP17.19■□□□□ 0.34
BRCA1-228ENST00000618469 PDCL2Q8N4E4 241 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 DCLK2Q8N568 766 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 ERCC4Q92889 916 aaPredicted RBP17.19■□□□□ 0.34
BRCA1-228ENST00000618469 HINFPQ9BQA5 517 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 RTP3Q9BQQ7 232 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 KCNK12Q9HB15 430 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 RMND1Q9NWS8 449 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 CA14Q9ULX7 337 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 L1RE1Q9UN81 338 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 SNX9Q9Y5X1 595 aa17.19■□□□□ 0.34
BRCA1-228ENST00000618469 KINO60870 393 aaKnown RBP17.18■□□□□ 0.34
BRCA1-228ENST00000618469 HUS1O60921 280 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 VNN2O95498 520 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 CASP4P49662 377 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 CEP135Q66GS9 1140 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 TRAPPC11Q7Z392 1133 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 SLC9A9Q8IVB4 645 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 THEM5Q8N1Q8 247 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 GUF1Q8N442 669 aaKnown RBP17.18■□□□□ 0.34
BRCA1-228ENST00000618469 HPDLQ96IR7 371 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 ZCWPW1Q9H0M4 648 aa17.18■□□□□ 0.34
BRCA1-228ENST00000618469 GZF1Q9H116 711 aaPredicted RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms