RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 LRG1P02750 347 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 KRT13P13646 458 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 SP100P23497 879 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-215ENST00000601150 ATICP31939 592 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 VAMP7P51809 220 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 DLG4P78352 724 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 ENPEPQ07075 957 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 BIRC3Q13489 604 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 MORC3Q14149 939 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 CAMK4Q16566 473 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 ANKRD40Q6AI12 368 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 DPH6Q7L8W6 267 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 RNF135Q8IUD6 432 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 ADGRF2Q8IZF7 708 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 TOP6BLQ8N6T0 577 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 TDRD5Q8NAT2 981 aaKnown RBP18.1■□□□□ 0.49
TRIM28-215ENST00000601150 SPATA18Q8TC71 538 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 ACSF2Q96CM8 615 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-215ENST00000601150 DHTKD1Q96HY7 919 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-215ENST00000601150 PGLYRP2Q96PD5 576 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 TMEM209Q96SK2 561 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 MKNK1Q9BUB5 465 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 ZCWPW1Q9H0M4 648 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 POLIQ9UNA4 740 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 INSL5Q9Y5Q6 135 aa18.1■□□□□ 0.49
TRIM28-215ENST00000601150 C2CD4DB7Z1M9 353 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 IKBKBO14920 756 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 STAU1O95793 577 aaKnown RBP18.09■□□□□ 0.49
TRIM28-215ENST00000601150 C4BPAP04003 597 aaKnown RBP18.09■□□□□ 0.49
TRIM28-215ENST00000601150 CCNE1P24864 410 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 MYL7Q01449 175 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 LRRC63Q05C16 580 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 SOWAHAQ2M3V2 549 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 TDRD10Q5VZ19 366 aaKnown RBP18.09■□□□□ 0.49
TRIM28-215ENST00000601150 OTOP3Q7RTS5 596 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 GRASPQ7Z6J2 395 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-215ENST00000601150 TRIML1Q8N9V2 468 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 SYAP1Q96A49 352 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-215ENST00000601150 DDX43Q9NXZ2 648 aaKnown RBP18.09■□□□□ 0.49
TRIM28-215ENST00000601150 KIAA1468Q9P260 1216 aa18.09■□□□□ 0.49
TRIM28-215ENST00000601150 NOTCH4Q99466 2003 aa18.08■□□□□ 0.49
TRIM28-215ENST00000601150 MTMR11A4FU01 709 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 VNN2O95498 520 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 EPB41P11171 864 aaKnown RBP18.08■□□□□ 0.48
TRIM28-215ENST00000601150 CD44P16070 742 aaKnown RBP18.08■□□□□ 0.48
TRIM28-215ENST00000601150 BMP6P22004 513 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 LHX1P48742 406 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 PMS1P54277 932 aaKnown RBP18.08■□□□□ 0.48
TRIM28-215ENST00000601150 MYL6P60660 151 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 FKBP3Q00688 224 aaKnown RBP18.08■□□□□ 0.48
TRIM28-215ENST00000601150 TSPY1Q01534 308 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 SMARCB1Q12824 385 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 NCOA4Q13772 614 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 ZACNQ401N2 412 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 SLC39A12Q504Y0 691 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 C1orf220Q5T0J3 134 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 LIMS2Q7Z4I7 341 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 ZC3H3Q8IXZ2 948 aaKnown RBP18.08■□□□□ 0.48
TRIM28-215ENST00000601150 DCP1BQ8IZD4 617 aaKnown RBP18.08■□□□□ 0.48
TRIM28-215ENST00000601150 ZDHHC14Q8IZN3 488 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 PLCD3Q8N3E9 789 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 KHSRPQ92945 711 aaKnown RBP eCLIP18.08■□□□□ 0.48
TRIM28-215ENST00000601150 EEF2KMTQ96G04 330 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 MMS19Q96T76 1030 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 XYLT2Q9H1B5 865 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 LMBRD1Q9NUN5 540 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 DOCK8Q8NF50 2099 aa18.08■□□□□ 0.48
TRIM28-215ENST00000601150 TRIM49BA6NDI0 452 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 PPP1R3GB7ZBB8 358 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 GABRDO14764 452 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 VNN1O95497 513 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 FSHRP23945 695 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 TNNC1P63316 161 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 DUSP4Q13115 394 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 WDR72Q3MJ13 1102 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 KLHL10Q6JEL2 608 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 SV2AQ7L0J3 742 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 OSTM1Q86WC4 334 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 ELMOD1Q8N336 334 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 ATAD1Q8NBU5 361 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 C2orf15Q8WU43 125 aaKnown RBP18.07■□□□□ 0.48
TRIM28-215ENST00000601150 ACBD6Q9BR61 282 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 CLSTN2Q9H4D0 955 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 HCFC1R1Q9NWW0 138 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 HSFX1Q9UBD0 423 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 YIPF1Q9Y548 306 aa18.07■□□□□ 0.48
TRIM28-215ENST00000601150 GOLGA6L22H0YM25 854 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 SLC16A3O15427 465 aaKnown RBP18.06■□□□□ 0.48
TRIM28-215ENST00000601150 FAM163BP0C2L3 166 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 TRIM49P0CI25 452 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 TRIM49CP0CI26 452 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 WARSP23381 471 aaKnown RBP18.06■□□□□ 0.48
TRIM28-215ENST00000601150 PCSK1P29120 753 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 GBP2P32456 591 aaPredicted RBP18.06■□□□□ 0.48
TRIM28-215ENST00000601150 MCCD1P59942 119 aaPredicted RBP18.06■□□□□ 0.48
TRIM28-215ENST00000601150 NTHL1P78549 312 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 TWF1Q12792 350 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 PLD1Q13393 1074 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 ZNF699Q32M78 642 aa18.06■□□□□ 0.48
TRIM28-215ENST00000601150 FOXR2Q6PJQ5 311 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms