RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 EPHA5P54756 1037 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 DHX8Q14562 1220 aaKnown RBP9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 SF3A2Q15428 464 aaKnown RBP9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 KRT79Q5XKE5 535 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 NAIF1Q69YI7 327 aaPredicted RBP9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 DSTYKQ6XUX3 929 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 PRR23CQ6ZRP0 262 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 RTL10Q7L3V2 364 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 MFSD6LQ8IWD5 586 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 YAF2Q8IY57 180 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 TMEM161BQ8NDZ6 487 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 APPL2Q8NEU8 664 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 OR10T2Q8NGX3 314 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 CSGALNACT1Q8TDX6 532 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 ZCCHC14Q8WYQ9 949 aaKnown RBP9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 FAM84AQ96KN4 292 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 DRC1Q96MC2 740 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 ATXN3LQ9H3M9 355 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 RXFP3Q9NSD7 469 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 SEMA4GQ9NTN9 838 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 RAB23Q9ULC3 237 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 LIMCH1Q9UPQ0 1083 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 SCN1AP35498 2009 aa9.41□□□□□ -0.9
SHKBP1-220ENST00000599716 TTC26A0AVF1 554 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 MTMR11A4FU01 709 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 SPECC1L-ADORA2AF8WAN1 911 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 M0QZQ0 153 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 TULP1O00294 542 aaPredicted RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 AXIN1O15169 862 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 CLDN3O15551 220 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 TOM1L1O75674 476 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 RETP07949 1114 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 PLS3P13797 630 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 MUTP22033 750 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 U2AF2P26368 475 aaKnown RBP eCLIP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 GABRR2P28476 465 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 NMT1P30419 496 aaKnown RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 CTHP32929 405 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 MCL1Q07820 350 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 STRN3Q13033 797 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 ENOX2Q16206 610 aaKnown RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 ARSHQ5FYA8 562 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 GPR158Q5T848 1215 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 TRIM68Q6AZZ1 485 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 LAIR1Q6GTX8 287 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 DNAJB7Q7Z6W7 309 aaPredicted RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 FAM160A2Q8N612 972 aaPredicted RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 FAM184AQ8NB25 1140 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 TTC16Q8NEE8 873 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 ADAM32Q8TC27 787 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 GIPC2Q8TF65 315 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 DEPDC1BQ8WUY9 529 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 BICD1Q96G01 975 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 SEPT5Q99719 369 aaPredicted RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 ADAM33Q9BZ11 813 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 TRPV4Q9HBA0 871 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 NOL7Q9UMY1 257 aaKnown RBP9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 COL12A1Q99715 3063 aa9.4□□□□□ -0.9
SHKBP1-220ENST00000599716 DOPEY1Q5JWR5 2465 aa9.4□□□□□ -0.91
SHKBP1-220ENST00000599716 APC2O95996 2303 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 SPAG17Q6Q759 2223 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 NUP210Q8TEM1 1887 aaPredicted RBP9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 VWA3AA6NCI4 1184 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 OTOL1A6NHN0 477 aaPredicted RBP9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 EIF4E1BA6NMX2 242 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 MICAL2O94851 1124 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 OAZ2O95190 189 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 NFICP08651 508 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 PLA2G4BP0C869 781 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 ATF6P18850 670 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 GPR15P49685 360 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 LIMK1P53667 647 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 EPHB3P54753 998 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 PLD1Q13393 1074 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 ORC2Q13416 577 aaPredicted RBP9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 PDIA5Q14554 519 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 ZBTB6Q15916 424 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 CSRP2Q16527 193 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 SDHAF4Q5VUM1 108 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 SCARA3Q6AZY7 606 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 MCTP1Q6DN14 999 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 OVOS1Q6IE37 1185 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 JADE1Q6IE81 842 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 CENPPQ6IPU0 288 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 SLC39A4Q6P5W5 647 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 DTHD1Q6ZMT9 781 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 CEP68Q76N32 757 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 USP37Q86T82 979 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 SPEM1Q8N4L4 309 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 CELF5Q8N6W0 485 aaKnown RBP9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 BEST2Q8NFU1 509 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 RIN3Q8TB24 985 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 FAM200AQ8TCP9 573 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 GATA6Q92908 595 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 CHFRQ96EP1 664 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 SENP8Q96LD8 212 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 FAM126AQ9BYI3 521 aaPredicted RBP9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 TRPV5Q9NQA5 729 aa9.39□□□□□ -0.91
SHKBP1-220ENST00000599716 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms