RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 GPR32O75388 356 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 RPL21P46778 160 aaKnown RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 ZNF157P51786 506 aaPredicted RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 ZNF200P98182 395 aaPredicted RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 TMEM132DQ14C87 1099 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 TAF1CQ15572 869 aaPredicted RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 CLUL1Q15846 466 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 PPP2R5EQ16537 467 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 PTPN20Q4JDL3 420 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 KCTD16Q68DU8 428 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 TMC3Q7Z5M5 1100 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 SLC4A11Q8NBS3 891 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 TMEM35BQ8NCS4 154 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 FBXO25Q8TCJ0 367 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.35■□□□□ 0.05
VRK3-217ENST00000599538 OSMRQ99650 979 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 FAM118BQ9BPY3 351 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 EIF2AQ9BY44 585 aaKnown RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 ASB7Q9H672 318 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 LRRC4CQ9HCJ2 640 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 FAM114A2Q9NRY5 505 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.35■□□□□ 0.05
VRK3-217ENST00000599538 PCDHGC3Q9UN70 934 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 AGAP1Q9UPQ3 857 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 R3HDM2Q9Y2K5 976 aaKnown RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 SCINQ9Y6U3 715 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 GOLGA6CA6NDK9 693 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 F8VP50 259 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 H0YGN5 161 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 NPTXRO95502 500 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 F2P00734 622 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 GOLGA6DP0CG33 693 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 CYP2B6P20813 491 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 CDH5P33151 784 aaPredicted RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 SSR1P43307 286 aaKnown RBP15.35■□□□□ 0.05
VRK3-217ENST00000599538 PLTPP55058 493 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 BEX3Q00994 111 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 TXNRD3NBQ6F5E7 133 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 TLK2Q86UE8 772 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 CCDC105Q8IYK2 499 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 ACAP3Q96P50 834 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 RUFY1Q96T51 708 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 GOLGA6AQ9NYA3 693 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 NFS1Q9Y697 457 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 SCN1AP35498 2009 aa15.35■□□□□ 0.05
VRK3-217ENST00000599538 LSM8O95777 96 aaKnown RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 RALAP11233 206 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 EIF4BP23588 611 aaKnown RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 DHX9Q08211 1270 aaKnown RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 PPP1R15BQ5SWA1 713 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 UBAP2Q5T6F2 1119 aaKnown RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 ZNF410Q86VK4 478 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 ERICH1Q86X53 443 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 TMEM40Q8WWA1 233 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 HPDLQ96IR7 371 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 ZMAT2Q96NC0 199 aaKnown RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 MTUS1Q9ULD2 1270 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 ZNF236Q9UL36 1845 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 PI4K2BG5E9Z4 385 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 PPEF2O14830 753 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 CILPO75339 1184 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 ADCY2Q08462 1091 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 SGO2Q562F6 1265 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 DNAJC21Q5F1R6 531 aaKnown RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 CCDC50Q8IVM0 306 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 RHOT1Q8IXI2 618 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 C12orf50Q8NA57 414 aaPredicted RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 RNF25Q96BH1 459 aaPredicted RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 ACSF2Q96CM8 615 aaPredicted RBP15.34■□□□□ 0.05
VRK3-217ENST00000599538 KIF12Q96FN5 646 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 CPXM1Q96SM3 734 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 FMO2Q99518 471 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 LRRC19Q9H756 370 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 DPP3Q9NY33 737 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 SNTG2Q9NY99 539 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 PSD3Q9NYI0 1048 aa15.34■□□□□ 0.05
VRK3-217ENST00000599538 BRCA2P51587 3418 aa15.33■□□□□ 0.05
VRK3-217ENST00000599538 GOLGA8SH3BPF8 625 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 OPA1O60313 960 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 CALB1P05937 261 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 CYP2C9P11712 490 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 DNAJC24Q6P3W2 148 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 GOLGA6L1Q8N7Z2 621 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 UBLCP1Q8WVY7 318 aaPredicted RBP15.33■□□□□ 0.04
VRK3-217ENST00000599538 DNAJB3Q8WWF6 145 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 USP6NLQ92738 828 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 ADPGKQ9BRR6 497 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 TXLNGYQ9BZA5 131 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 SLC5A4Q9NY91 659 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 GJD2Q9UKL4 321 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 ATP8A1Q9Y2Q0 1164 aa15.33■□□□□ 0.04
VRK3-217ENST00000599538 RRN3P2A6NIE6 340 aa15.32■□□□□ 0.04
VRK3-217ENST00000599538 GOLGA8KD6RF30 607 aa15.32■□□□□ 0.04
VRK3-217ENST00000599538 TREHO43280 583 aa15.32■□□□□ 0.04
VRK3-217ENST00000599538 CTGFP29279 349 aa15.32■□□□□ 0.04
VRK3-217ENST00000599538 GRM5P41594 1212 aa15.32■□□□□ 0.04
VRK3-217ENST00000599538 ADAM17P78536 824 aa15.32■□□□□ 0.04
VRK3-217ENST00000599538 PTPN11Q06124 597 aaPredicted RBP15.32■□□□□ 0.04
VRK3-217ENST00000599538 KLF1Q13351 362 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms