RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CCDC65Q8IXS2 484 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 EFCAB13Q8IY85 973 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 TTC9BQ8N6N2 239 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 PDILTQ8N807 584 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 OR10T2Q8NGX3 314 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 CSGALNACT1Q8TDX6 532 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 NOC3LQ8WTT2 800 aaKnown RBP10.58□□□□□ -0.72
VRK3-216ENST00000599342 C2orf15Q8WU43 125 aaKnown RBP10.58□□□□□ -0.72
VRK3-216ENST00000599342 CACTINQ8WUQ7 758 aaKnown RBP10.58□□□□□ -0.72
VRK3-216ENST00000599342 PSMG2Q969U7 264 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 DNAJC19Q96DA6 116 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 SAAL1Q96ER3 474 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 STRA6Q9BX79 667 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 PANK2Q9BZ23 570 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 LRRC27Q9C0I9 530 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 ZCWPW1Q9H0M4 648 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 DNAJC25Q9H1X3 360 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 IKZF4Q9H2S9 585 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 ATXN3LQ9H3M9 355 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 TMEM206Q9H813 350 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 TRPV4Q9HBA0 871 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 ZNF334Q9HCZ1 680 aaPredicted RBP10.58□□□□□ -0.72
VRK3-216ENST00000599342 PANK4Q9NVE7 773 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 RBAKQ9NYW8 714 aaPredicted RBP10.58□□□□□ -0.72
VRK3-216ENST00000599342 FBXO4Q9UKT5 387 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 NDRG2Q9UN36 371 aaKnown RBP10.58□□□□□ -0.72
VRK3-216ENST00000599342 MIA3Q5JRA6 1907 aa10.58□□□□□ -0.72
VRK3-216ENST00000599342 MYO15AQ9UKN7 3530 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 TSC2P49815 1807 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 FRMD3A2A2Y4 597 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 KPNA7A9QM74 516 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 NRG2O14511 850 aaPredicted RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 KINO60870 393 aaKnown RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 ITGB3P05106 788 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 GARTP22102 1010 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 GABRR2P28476 465 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 CDC25CP30307 473 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 POLR2BP30876 1174 aaKnown RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 RPS9P46781 194 aaKnown RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 NASPP49321 788 aaPredicted RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 CASP5P51878 434 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 TSPY1Q01534 308 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 CSTF1Q05048 431 aaKnown RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 ZNF528Q3MIS6 628 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 WSCD1Q658N2 575 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 DNAJB7Q7Z6W7 309 aaPredicted RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 MFSD6LQ8IWD5 586 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 DCP1BQ8IZD4 617 aaKnown RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 SPPL2BQ8TCT7 592 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 FAM3CQ92520 227 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 CLDN23Q96B33 292 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 ZNF396Q96N95 335 aaPredicted RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 LPIN3Q9BQK8 851 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 LRRC3Q9BY71 257 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 BACH2Q9BYV9 841 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 TRPV5Q9NQA5 729 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 ABI2Q9NYB9 513 aaPredicted RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 R3HCC1Q9Y3T6 440 aaKnown RBP10.57□□□□□ -0.72
VRK3-216ENST00000599342 PIAS3Q9Y6X2 628 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 CACNA1HO95180 2353 aa10.57□□□□□ -0.72
VRK3-216ENST00000599342 A0A087X0B3 334 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 SPTLC2O15270 562 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 PPP6R2O75170 966 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 HSP90AA1P07900 732 aaKnown RBP10.56□□□□□ -0.72
VRK3-216ENST00000599342 KRT19P08727 400 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 TMEM191BP0C7N4 346 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 AMPD3Q01432 767 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 PPP2R5DQ14738 602 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 STXBP5Q5T5C0 1151 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 GPR158Q5T848 1215 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 C1orf228Q6PIY5 440 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 ARID3BQ8IVW6 561 aaPredicted RBP10.56□□□□□ -0.72
VRK3-216ENST00000599342 MAML2Q8IZL2 1156 aaPredicted RBP10.56□□□□□ -0.72
VRK3-216ENST00000599342 LINC00301Q8NCQ3 95 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 ATRIPQ8WXE1 791 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 BORCS6Q96GS4 357 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 MSANTD3Q96H12 275 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 CBWD1Q9BRT8 395 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 TNMDQ9H2S6 317 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 CUEDC2Q9H467 287 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 ITGA11Q9UKX5 1188 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 AGAP1Q9UPQ3 857 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 PCDHB5Q9Y5E4 795 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 NCANO14594 1321 aa10.56□□□□□ -0.72
VRK3-216ENST00000599342 ANK1P16157 1881 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 GOLGA8IPA6NC78 632 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 GOLGA8JA6NMD2 632 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 KIAA0391O15091 583 aaKnown RBP10.55□□□□□ -0.72
VRK3-216ENST00000599342 CHADO15335 359 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 EXTL3O43909 919 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 HUS1O60921 280 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 PRPF6O94906 941 aaKnown RBP10.55□□□□□ -0.72
VRK3-216ENST00000599342 ATF6P18850 670 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 CCNE1P24864 410 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 CDR1P51861 262 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 KPNA1P52294 538 aaPredicted RBP10.55□□□□□ -0.72
VRK3-216ENST00000599342 CYP4F8P98187 520 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 BFSP1Q12934 665 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 MTAPQ13126 283 aa10.55□□□□□ -0.72
VRK3-216ENST00000599342 GAREM2Q75VX8 874 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms