RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 DNMT3BQ9UBC3 853 aaKnown RBP15.22■□□□□ 0.03
LIG1-218ENST00000599322 FRMD4BQ9Y2L6 1034 aa15.22■□□□□ 0.03
LIG1-218ENST00000599322 ASB3Q9Y575 518 aa15.22■□□□□ 0.03
LIG1-218ENST00000599322 PDCD11Q14690 1871 aaKnown RBP15.22■□□□□ 0.03
LIG1-218ENST00000599322 VWA8A3KMH1 1905 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 PDXKO00764 312 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 SPTLC1O15269 473 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 TGFB1I1O43294 461 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 FGF19O95750 216 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 RHOP08100 348 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 LHX1P48742 406 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 AP3M2P53677 418 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 VCPP55072 806 aaKnown RBP15.21■□□□□ 0.03
LIG1-218ENST00000599322 NTHL1P78549 312 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 TCF15Q12870 199 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 STK4Q13043 487 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 DUSP4Q13115 394 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 PSMD6Q15008 389 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 NFE2Q16621 373 aaPredicted RBP15.21■□□□□ 0.03
LIG1-218ENST00000599322 SLC39A12Q504Y0 691 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 WSCD1Q658N2 575 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 DPH6Q7L8W6 267 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 C1orf127Q8N9H9 656 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 SPATA18Q8TC71 538 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 SPPL2BQ8TCT7 592 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 FGF13Q92913 245 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 HPDLQ96IR7 371 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 CHAMP1Q96JM3 812 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 PRRX2Q99811 253 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 AVENQ9NQS1 362 aaPredicted RBP15.21■□□□□ 0.03
LIG1-218ENST00000599322 GDE1Q9NZC3 331 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 HSFX1Q9UBD0 423 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 CIZ1Q9ULV3 898 aaPredicted RBP15.21■□□□□ 0.03
LIG1-218ENST00000599322 SNX9Q9Y5X1 595 aa15.21■□□□□ 0.03
LIG1-218ENST00000599322 STK25O00506 426 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 KLRC4O43908 158 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 MICAL2O94851 1124 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 SEC24AO95486 1093 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 OR4Q2P0C623 313 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 MYL4P12829 197 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 RPL13P26373 211 aaKnown RBP15.2■□□□□ 0.02
LIG1-218ENST00000599322 PCSK1P29120 753 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 HOXD13P35453 343 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 ANP32AP39687 249 aaKnown RBP15.2■□□□□ 0.02
LIG1-218ENST00000599322 CYP24A1Q07973 514 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 KCNB1Q14721 858 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 MGAT5BQ3V5L5 792 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 TOP6BLQ8N6T0 577 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 ZSWIM2Q8NEG5 633 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 FEZF2Q8TBJ5 459 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 GCNAQ96QF7 691 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 CGRRF1Q99675 332 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 SEPT5Q99719 369 aaPredicted RBP15.2■□□□□ 0.02
LIG1-218ENST00000599322 GPR88Q9GZN0 384 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 HCFC1R1Q9NWW0 138 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 GDAP2Q9NXN4 497 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 DUSP12Q9UNI6 340 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 YIPF1Q9Y548 306 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 PCDHB5Q9Y5E4 795 aa15.2■□□□□ 0.02
LIG1-218ENST00000599322 MTMR11A4FU01 709 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 RHOBTB3O94955 611 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 PDGFBP01127 241 aaPredicted RBP15.19■□□□□ 0.02
LIG1-218ENST00000599322 PTPN5P54829 565 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 TNNC1P63316 161 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 BIRC3Q13489 604 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 CEP135Q66GS9 1140 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 LMBRD2Q68DH5 695 aaPredicted RBP15.19■□□□□ 0.02
LIG1-218ENST00000599322 CENPPQ6IPU0 288 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 TRAPPC11Q7Z392 1133 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 TMEM130Q8N3G9 435 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 SLC44A3Q8N4M1 653 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 ITFG1Q8TB96 612 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 MCRS1Q96EZ8 462 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 MMS19Q96T76 1030 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 ACBD6Q9BR61 282 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 ZCWPW1Q9H0M4 648 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 DDX43Q9NXZ2 648 aaKnown RBP15.19■□□□□ 0.02
LIG1-218ENST00000599322 SLC27A5Q9Y2P5 690 aa15.19■□□□□ 0.02
LIG1-218ENST00000599322 N4BP1O75113 896 aaKnown RBP15.18■□□□□ 0.02
LIG1-218ENST00000599322 NR3C1P04150 777 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 SRFP11831 508 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 KRT13P13646 458 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 TRIM21P19474 475 aaKnown RBP15.18■□□□□ 0.02
LIG1-218ENST00000599322 ATICP31939 592 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 FAM160A1Q05DH4 1040 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 DPYDQ12882 1025 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 MAPRE1Q15691 268 aaKnown RBP15.18■□□□□ 0.02
LIG1-218ENST00000599322 ARHGAP15Q53QZ3 475 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 SLC9A9Q8IVB4 645 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 ADGRF2Q8IZF7 708 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 PDCL2Q8N4E4 241 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 ATAD1Q8NBU5 361 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 KIAA0895Q8NCT3 520 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 OR5B17Q8NGF7 314 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 ING5Q8WYH8 240 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 SYAP1Q96A49 352 aaPredicted RBP15.18■□□□□ 0.02
LIG1-218ENST00000599322 BORCS6Q96GS4 357 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 SNX25Q9H3E2 840 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 SLITRK6Q9H5Y7 841 aa15.18■□□□□ 0.02
LIG1-218ENST00000599322 ABI2Q9NYB9 513 aaPredicted RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms