RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 WEE2P0C1S8 567 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 OR4Q2P0C623 313 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 ACO1P21399 889 aaKnown RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 WARSP23381 471 aaKnown RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 PON1P27169 355 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 RAP1GAPP47736 663 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 COPB1P53618 953 aaKnown RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 DLX2Q07687 328 aaPredicted RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 TRPC3Q13507 836 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 RAB33AQ14088 237 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 PSMD5Q16401 504 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 TMEM184AQ6ZMB5 413 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 RBM23Q86U06 439 aaKnown RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 ZNF560Q96MR9 790 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 KREMEN1Q96MU8 473 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 TWNKQ96RR1 684 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 CRACR2AQ9BSW2 395 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 VPS16Q9H269 839 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 CRISPLD1Q9H336 500 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 NSUN3Q9H649 340 aaKnown RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 ENTPD7Q9NQZ7 604 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 MRPL17Q9NRX2 175 aaKnown RBP11.34□□□□□ -0.59
LIG1-210ENST00000596332 CLEC1BQ9P126 229 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 HMGXB4Q9UGU5 601 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 COL6A3P12111 3177 aa11.34□□□□□ -0.59
LIG1-210ENST00000596332 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 WDR27A2RRH5 827 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 SMTNL1A8MU46 457 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 RNF225M0QZC1 329 aaPredicted RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 TEX33O43247 280 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 SEC24AO95486 1093 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 CAVIN2O95810 425 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 URODP06132 367 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 EPCAMP16422 314 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 IGFBP4P22692 258 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 OR1D2P34982 312 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 PIK3CAP42336 1068 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 MTIF2P46199 727 aaKnown RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 NRIP1P48552 1158 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 KLK7P49862 253 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 NOP14P78316 857 aaKnown RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 INCA1Q0VD86 236 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 MYO1EQ12965 1108 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 PTPROQ16827 1216 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 TPD52L1Q16890 204 aaPredicted RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 ZNF699Q32M78 642 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 OVOS1Q6IE37 1185 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 FAM171BQ6P995 826 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 GJB7Q6PEY0 223 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 PAQR9Q6ZVX9 377 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 ANKS3Q6ZW76 656 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 USP37Q86T82 979 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 FAM114A1Q8IWE2 563 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 APPL2Q8NEU8 664 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 MICAL1Q8TDZ2 1067 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 FAXDC2Q96IV6 333 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 NAA15Q9BXJ9 866 aaKnown RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 NAT10Q9H0A0 1025 aaKnown RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 INTS2Q9H0H0 1204 aaKnown RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 ZCWPW1Q9H0M4 648 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 RBSNQ9H1K0 784 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 TSPY26PQ9H489 355 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 DPEP3Q9H4B8 488 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 CRTAC1Q9NQ79 661 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 RTN4Q9NQC3 1192 aaKnown RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 NXF1Q9UBU9 619 aaKnown RBP11.33□□□□□ -0.6
LIG1-210ENST00000596332 SIK3Q9Y2K2 1263 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 STXBP5LQ9Y2K9 1186 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 CDY1Q9Y6F8 540 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 PRUNE2Q8WUY3 3088 aa11.33□□□□□ -0.6
LIG1-210ENST00000596332 A0A1B0GTH6 734 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 MYBPHLA2RUH7 354 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 EPHB6O15197 1021 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 TGM5O43548 720 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 HUS1O60921 280 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 CILPO75339 1184 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 C1RP00736 705 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 SPATA31D3P0C874 917 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 ODC1P11926 461 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 FOSL2P15408 326 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 ACAT1P24752 427 aaKnown RBP11.32□□□□□ -0.6
LIG1-210ENST00000596332 PBX1P40424 430 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 CDR1P51861 262 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 MYL7Q01449 175 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 ROR1Q01973 937 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 YWHAHQ04917 246 aaPredicted RBP11.32□□□□□ -0.6
LIG1-210ENST00000596332 LRMPQ12912 555 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 NR1I3Q14994 352 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 PTPN21Q16825 1174 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 CTXN3Q4LDR2 81 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 ZNF667Q5HYK9 610 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 TRIM65Q6PJ69 517 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 RNF19BQ6ZMZ0 732 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 SPATA31D4Q6ZUB0 917 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 PALB2Q86YC2 1186 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 CREBRFQ8IUR6 639 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 GLYCTKQ8IVS8 523 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 ADGRF2Q8IZF7 708 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 CRYBG2Q8N1P7 616 aa11.32□□□□□ -0.6
LIG1-210ENST00000596332 TMEM86AQ8N2M4 240 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms