RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 COL4A4P53420 1690 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 CCP110O43303 1012 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 ZSCAN12O43309 604 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 HOXA2O43364 376 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 CA3P07451 260 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 PLEKP08567 350 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 WEE2P0C1S8 567 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 CD58P19256 250 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 KCNJ6P48051 423 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 TAF6P49848 677 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 AFF1P51825 1210 aaKnown RBP13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 FOXK2Q01167 660 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 PTK2Q05397 1052 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 SOX4Q06945 474 aaPredicted RBP13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 MTF1Q14872 753 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 SPA17Q15506 151 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 TCTN1Q2MV58 587 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 SV2CQ496J9 727 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 NOMO2Q5JPE7 1267 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 SCARA5Q6ZMJ2 495 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 GJD3Q8N144 294 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 TTC39CQ8N584 583 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 ARID3AQ99856 593 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 GOLGA2P5Q9HBQ8 144 aa13.96□□□□□ -0.17
SHKBP1-209ENST00000595803 C5orf42Q9H799 3197 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 ABHD14A-ACY1A0A1B0GW23 586 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 KPNA7A9QM74 516 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 ESPNB1AK53 854 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 EIF3CLB5ME19 914 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 PPEF2O14830 753 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 INPPL1O15357 1258 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 NDUFA10O95299 355 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 PFKMP08237 780 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 FGFR1P11362 822 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 ALADP13716 330 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 ACO1P21399 889 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 ANXA13P27216 316 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 SSTR3P32745 418 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 CLCN1P35523 988 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 ASPAP45381 313 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 KRT83P78385 493 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 TUSC3Q13454 348 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 TMEM270Q6UE05 265 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 ZNF571Q7Z3V5 609 aaPredicted RBP13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 NPAS4Q8IUM7 802 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 UROC1Q96N76 676 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 EIF3CQ99613 913 aaKnown RBP13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 AGPAT1Q99943 283 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 BCO2Q9BYV7 579 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 CISHQ9NSE2 258 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 SNX9Q9Y5X1 595 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 SLC4A7Q9Y6M7 1214 aa13.95□□□□□ -0.18
SHKBP1-209ENST00000595803 CASTOR2A6NHX0 329 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 PODXLO00592 558 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 EFCAB14O75071 495 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 AMHP03971 560 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 CCDC175P0C221 793 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 ATP2A2P16615 1042 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 PAX3P23760 479 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 RAP1GAPP47736 663 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 CLCNKBP51801 687 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 KIF11P52732 1056 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 CDH8P55286 799 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 RNASELQ05823 741 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 SCN5AQ14524 2016 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 NAB2Q15742 525 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 CLLU1OSQ5K130 101 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 DCLRE1AQ6PJP8 1040 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 DSTYKQ6XUX3 929 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 TOGARAM2Q6ZUX3 1019 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 RBBP8NLQ8NC74 664 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 DNAI2Q9GZS0 605 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 PDCL3Q9H2J4 239 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 FAM124BQ9H5Z6 455 aaPredicted RBP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 SPTLC3Q9NUV7 552 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 SEPT11Q9NVA2 429 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 TRMT1Q9NXH9 659 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 PUF60Q9UHX1 559 aaKnown RBP13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 CNTN6Q9UQ52 1028 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 ADGRG1Q9Y653 693 aa13.94□□□□□ -0.18
SHKBP1-209ENST00000595803 ZBBXA8MT70 800 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 HUS1O60921 280 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 UPP2O95045 317 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 FAM163BP0C2L3 166 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 CYP11B1P15538 503 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 MAGEA1P43355 309 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 PDE6CP51160 858 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 LILRA4P59901 499 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 GFPT1Q06210 699 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 BMS1Q14692 1282 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 ASTE1Q2TB18 679 aaPredicted RBP13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 ZNF394Q53GI3 561 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 KIAA1328Q86T90 577 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 SLC47A2Q86VL8 602 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 CCAR2Q8N163 923 aaKnown RBP13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 UBR7Q8N806 425 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 ARNTL2Q8WYA1 636 aa13.93□□□□□ -0.18
SHKBP1-209ENST00000595803 RSPH1Q8WYR4 309 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms