RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 FAM26DQ5JW98 314 aa21.11■□□□□ 0.97
TRIM47-204ENST00000587339 ZNF618Q5T7W0 954 aa21.11■□□□□ 0.97
TRIM47-204ENST00000587339 NOA1Q8NC60 698 aaKnown RBP21.11■□□□□ 0.97
TRIM47-204ENST00000587339 ELOVL4Q9GZR5 314 aa21.11■□□□□ 0.97
TRIM47-204ENST00000587339 KBTBD13C9JR72 458 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 PIRO00625 290 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 CAND2O75155 1236 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 MMP8P22894 467 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 PNPLA4P41247 253 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 NDST1P52848 882 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 C1QBPQ07021 282 aaKnown RBP21.1■□□□□ 0.97
TRIM47-204ENST00000587339 MMS22LQ6ZRQ5 1243 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 ZNF572Q7Z3I7 529 aaPredicted RBP21.1■□□□□ 0.97
TRIM47-204ENST00000587339 C1orf131Q8NDD1 294 aaKnown RBP21.1■□□□□ 0.97
TRIM47-204ENST00000587339 MS4A14Q96JA4 679 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 PBKQ96KB5 322 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 ZFP42Q96MM3 310 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 ZNF560Q96MR9 790 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 TRPV6Q9H1D0 765 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 A0A0U1RQG5 324 aaPredicted RBP21.1■□□□□ 0.97
TRIM47-204ENST00000587339 TMEM110-MUSTN1A8MSY1 372 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 ITIH3Q06033 890 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 SOX4Q06945 474 aaPredicted RBP21.1■□□□□ 0.97
TRIM47-204ENST00000587339 USP38Q8NB14 1042 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 SLC43A3Q8NBI5 491 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 EPC1Q9H2F5 836 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 GOLGA2P5Q9HBQ8 144 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 EHD2Q9NZN4 543 aa21.1■□□□□ 0.97
TRIM47-204ENST00000587339 CEP350Q5VT06 3117 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 MEIS3P2A8K0S8 358 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 PTGESO14684 152 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 CKBP12277 381 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 CDH5P33151 784 aaPredicted RBP21.09■□□□□ 0.97
TRIM47-204ENST00000587339 MLH1P40692 756 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 PTP4A2Q12974 167 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 PHLDB2Q86SQ0 1253 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 SPATA4Q8NEY3 305 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 HEXIM2Q96MH2 286 aaKnown RBP21.09■□□□□ 0.97
TRIM47-204ENST00000587339 RPS6KC1Q96S38 1066 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 SELENOOQ9BVL4 669 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 NT5C1AQ9BXI3 368 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 LHX5Q9H2C1 402 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 MRPL47Q9HD33 250 aaKnown RBP21.09■□□□□ 0.97
TRIM47-204ENST00000587339 SMARCAL1Q9NZC9 954 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 ANAPC7Q9UJX3 599 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 SQORQ9Y6N5 450 aa21.09■□□□□ 0.97
TRIM47-204ENST00000587339 PDCD11Q14690 1871 aaKnown RBP21.08■□□□□ 0.97
TRIM47-204ENST00000587339 KPNA7A9QM74 516 aa21.08■□□□□ 0.97
TRIM47-204ENST00000587339 VDRP11473 427 aa21.08■□□□□ 0.97
TRIM47-204ENST00000587339 RBM10P98175 930 aaKnown RBP21.08■□□□□ 0.97
TRIM47-204ENST00000587339 UBE2Q2Q8WVN8 375 aa21.08■□□□□ 0.97
TRIM47-204ENST00000587339 BTBD6Q96KE9 485 aa21.08■□□□□ 0.97
TRIM47-204ENST00000587339 PPP1R10Q96QC0 940 aaKnown RBP21.08■□□□□ 0.97
TRIM47-204ENST00000587339 TRAIPQ9BWF2 469 aa21.08■□□□□ 0.97
TRIM47-204ENST00000587339 PHF24Q9UPV7 400 aa21.08■□□□□ 0.97
TRIM47-204ENST00000587339 ARVCFO00192 962 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 CALB1P05937 261 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 COMTP21964 271 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 TAF6P49848 677 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 RAB27AP51159 221 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 C2orf54Q08AI8 447 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 LLGL2Q6P1M3 1020 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 WDTC1Q8N5D0 677 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 LPPQ93052 612 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 GAD1Q99259 594 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 MRPL45Q9BRJ2 306 aaKnown RBP21.08■□□□□ 0.96
TRIM47-204ENST00000587339 UNC93B1Q9H1C4 597 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 SLC38A7Q9NVC3 462 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 SCINQ9Y6U3 715 aa21.08■□□□□ 0.96
TRIM47-204ENST00000587339 MIF4GDA9UHW6 222 aaKnown RBP21.07■□□□□ 0.96
TRIM47-204ENST00000587339 CEP104O60308 925 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 MGEA5O60502 916 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 RHOXF2BP0C7M4 288 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 SGO2Q562F6 1265 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 PLEKHA7Q6IQ23 1121 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 DENND1BQ6P3S1 775 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 GSTCDQ8NEC7 633 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 RHOXF2Q9BQY4 288 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 PARVAQ9NVD7 372 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 GDAP2Q9NXN4 497 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 KIAA1257Q9ULG3 409 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 GIT1Q9Y2X7 761 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 SCN1AP35498 2009 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 FRMPD3Q5JV73 1810 aa21.07■□□□□ 0.96
TRIM47-204ENST00000587339 DDX3YO15523 660 aaKnown RBP21.06■□□□□ 0.96
TRIM47-204ENST00000587339 SPOPO43791 374 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 ZNF623O75123 536 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 MAMLD1Q13495 774 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 CNGA2Q16280 664 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 SOWAHAQ2M3V2 549 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 SV2CQ496J9 727 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 MRPL10Q7Z7H8 261 aaKnown RBP21.06■□□□□ 0.96
TRIM47-204ENST00000587339 ERICH1Q86X53 443 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 ADAM2Q99965 735 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 ANKZF1Q9H8Y5 726 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.06■□□□□ 0.96
TRIM47-204ENST00000587339 PTPN22Q9Y2R2 807 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 A0A0U1RQF3 1178 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 ARL5CA6NH57 179 aa21.06■□□□□ 0.96
TRIM47-204ENST00000587339 MYO1FO00160 1098 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms