RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 MSTO1Q9BUK6 570 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 ASB7Q9H672 318 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 C2CD2Q9Y426 696 aa12.87□□□□□ -0.35
LIG3-209ENST00000586435 TPRP12270 2363 aaKnown RBP12.86□□□□□ -0.35
LIG3-209ENST00000586435 MYBPHLA2RUH7 354 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 LRP3O75074 770 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 NFICP08651 508 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 LONP1P36776 959 aaKnown RBP12.86□□□□□ -0.35
LIG3-209ENST00000586435 CXCL12P48061 93 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 SMARCB1Q12824 385 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 GAS6Q14393 721 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 TMEM132DQ14C87 1099 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 ARHGAP29Q52LW3 1261 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 DGKKQ5KSL6 1271 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 STXBP5Q5T5C0 1151 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 LAIR1Q6GTX8 287 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 RALGPS2Q86X27 583 aaPredicted RBP12.86□□□□□ -0.35
LIG3-209ENST00000586435 TTC9BQ8N6N2 239 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 ATAD1Q8NBU5 361 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 OR10T2Q8NGX3 314 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 RAD54LQ92698 747 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 CCSER1Q9C0I3 900 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 ST6GALNAC4Q9H4F1 302 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 ZMYM5Q9UJ78 669 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 DSEQ9UL01 958 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 RAB23Q9ULC3 237 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 SLC27A5Q9Y2P5 690 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 STYXL1Q9Y6J8 313 aa12.86□□□□□ -0.35
LIG3-209ENST00000586435 TBCAO75347 108 aaKnown RBP12.85□□□□□ -0.35
LIG3-209ENST00000586435 PLCG1P19174 1290 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 GABRR2P28476 465 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 CDC25CP30307 473 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 CTHP32929 405 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 CNR2P34972 360 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 TUFMP49411 452 aaKnown RBP12.85□□□□□ -0.35
LIG3-209ENST00000586435 ATXN1P54253 815 aaKnown RBP12.85□□□□□ -0.35
LIG3-209ENST00000586435 PLCB2Q00722 1185 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 SATB1Q01826 763 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 MCM6Q14566 821 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 ARHGAP15Q53QZ3 475 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 SLFN12LQ6IEE8 588 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 C2orf15Q8WU43 125 aaKnown RBP12.85□□□□□ -0.35
LIG3-209ENST00000586435 LARP4BQ92615 738 aaKnown RBP12.85□□□□□ -0.35
LIG3-209ENST00000586435 TMEM209Q96SK2 561 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 RTKNQ9BST9 563 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 ZCWPW1Q9H0M4 648 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 ATXN3LQ9H3M9 355 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 GREB1Q4ZG55 1949 aa12.85□□□□□ -0.35
LIG3-209ENST00000586435 SLC38A8A6NNN8 435 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 SPECC1L-ADORA2AF8WAN1 911 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 DPYSL4O14531 572 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 KRT18P05783 430 aaKnown RBP12.84□□□□□ -0.35
LIG3-209ENST00000586435 RETP07949 1114 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 ATF6P18850 670 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 HOXA6P31267 233 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 MCM2P49736 904 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 TAF6P49848 677 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 KPNA1P52294 538 aaPredicted RBP12.84□□□□□ -0.35
LIG3-209ENST00000586435 DHX8Q14562 1220 aaKnown RBP12.84□□□□□ -0.35
LIG3-209ENST00000586435 VEPH1Q14D04 833 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 WDR44Q5JSH3 913 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 GPR158Q5T848 1215 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 BRAPQ7Z569 592 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 NT5DC4Q86YG4 428 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 SYNPOQ8N3V7 929 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 SPPL2BQ8TCT7 592 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 BPIFB1Q8TDL5 484 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 HVCN1Q96D96 273 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 FAM212AQ96EL1 285 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 LRRC3BQ96PB8 259 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 TASP1Q9H6P5 420 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 IL21Q9HBE4 155 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 PARD6AQ9NPB6 346 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 CDV3Q9UKY7 258 aaKnown RBP12.84□□□□□ -0.35
LIG3-209ENST00000586435 USP18Q9UMW8 372 aa12.84□□□□□ -0.35
LIG3-209ENST00000586435 CACNA1BQ00975 2339 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 ANKRD63C9JTQ0 380 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 K7ESF4 209 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 SOAT2O75908 522 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 CD2BP2O95400 341 aaKnown RBP12.83□□□□□ -0.36
LIG3-209ENST00000586435 PRAMEF12O95522 483 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 NMT1P30419 496 aaKnown RBP12.83□□□□□ -0.36
LIG3-209ENST00000586435 SOX9P48436 509 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 ACOT2P49753 483 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 GRIN1Q05586 938 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 CCINQ13939 588 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 KARSQ15046 597 aaKnown RBP12.83□□□□□ -0.36
LIG3-209ENST00000586435 MGAT5BQ3V5L5 792 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 SLC39A12Q504Y0 691 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 ADALQ6DHV7 355 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 TXNDC11Q6PKC3 985 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 LONP2Q86WA8 852 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 METTL23Q86XA0 190 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 THEM5Q8N1Q8 247 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 RASSF8Q8NHQ8 419 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 FAM200AQ8TCP9 573 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 GCNAQ96QF7 691 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 SEPT5Q99719 369 aaPredicted RBP12.83□□□□□ -0.36
LIG3-209ENST00000586435 LPIN3Q9BQK8 851 aa12.83□□□□□ -0.36
LIG3-209ENST00000586435 GTSE1Q9NYZ3 720 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms