RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GOLGA8IPA6NC78 632 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 GOLGA8JA6NMD2 632 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 LAMTOR5O43504 91 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 TARSP26639 723 aaKnown RBP22.12■■□□□ 1.13
SHMT1-209ENST00000582653 RPS9P46781 194 aaKnown RBP22.12■■□□□ 1.13
SHMT1-209ENST00000582653 TEAD2Q15562 447 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 E2F4Q16254 413 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 SHC4Q6S5L8 630 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 VITQ6UXI7 678 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 HSCBQ8IWL3 235 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 TTC9BQ8N6N2 239 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 ATAD1Q8NBU5 361 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 SPRYD3Q8NCJ5 442 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 GLIS3Q8NEA6 775 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 ZSCAN18Q8TBC5 510 aaPredicted RBP22.12■■□□□ 1.13
SHMT1-209ENST00000582653 DEPDC1BQ8WUY9 529 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 E2F7Q96AV8 911 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 DNAJC25Q9H1X3 360 aa22.12■■□□□ 1.13
SHMT1-209ENST00000582653 RIF1Q5UIP0 2472 aaKnown RBP22.12■■□□□ 1.13
SHMT1-209ENST00000582653 MTMR11A4FU01 709 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 MAN2B1O00754 1011 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 CYB561D2O14569 222 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 SOAT2O75908 522 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 GDI1P31150 447 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 VIPR2P41587 438 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 SCARA3Q6AZY7 606 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 DNAJB7Q7Z6W7 309 aaPredicted RBP22.11■■□□□ 1.13
SHMT1-209ENST00000582653 TMC8Q8IU68 726 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 OR10T2Q8NGX3 314 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 SHKBP1Q8TBC3 707 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 NOC3LQ8WTT2 800 aaKnown RBP22.11■■□□□ 1.13
SHMT1-209ENST00000582653 DHX58Q96C10 678 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 FAM84AQ96KN4 292 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 PYM1Q9BRP8 204 aaKnown RBP22.11■■□□□ 1.13
SHMT1-209ENST00000582653 CBWD1Q9BRT8 395 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 PCIF1Q9H4Z3 704 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 DSEQ9UL01 958 aa22.11■■□□□ 1.13
SHMT1-209ENST00000582653 CUTAO60888 179 aa22.1■■□□□ 1.13
SHMT1-209ENST00000582653 IL18RAPO95256 599 aa22.1■■□□□ 1.13
SHMT1-209ENST00000582653 YEATS4O95619 227 aa22.1■■□□□ 1.13
SHMT1-209ENST00000582653 HSP90AA1P07900 732 aaKnown RBP22.1■■□□□ 1.13
SHMT1-209ENST00000582653 ZSCAN22P10073 491 aaPredicted RBP22.1■■□□□ 1.13
SHMT1-209ENST00000582653 TUFMP49411 452 aaKnown RBP22.1■■□□□ 1.13
SHMT1-209ENST00000582653 TAF6P49848 677 aa22.1■■□□□ 1.13
SHMT1-209ENST00000582653 NT5DC4Q86YG4 428 aa22.1■■□□□ 1.13
SHMT1-209ENST00000582653 CCDC65Q8IXS2 484 aa22.1■■□□□ 1.13
SHMT1-209ENST00000582653 PSMG2Q969U7 264 aa22.1■■□□□ 1.13
SHMT1-209ENST00000582653 CACNA1IQ9P0X4 2223 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 A0A1W2PRU2 124 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 ZNF263O14978 683 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 GARTP22102 1010 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 MLLT6P55198 1093 aaPredicted RBP22.09■■□□□ 1.13
SHMT1-209ENST00000582653 TFAMQ00059 246 aaKnown RBP22.09■■□□□ 1.13
SHMT1-209ENST00000582653 ALCAMQ13740 583 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 PKP1Q13835 747 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 SLC39A12Q504Y0 691 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 WSCD1Q658N2 575 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 METTL23Q86XA0 190 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 BRSK2Q8IWQ3 736 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 ZNF687Q8N1G0 1237 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 THEM5Q8N1Q8 247 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 ZCWPW1Q9H0M4 648 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 TNMDQ9H2S6 317 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 KBTBD4Q9NVX7 518 aa22.09■■□□□ 1.13
SHMT1-209ENST00000582653 RBAKQ9NYW8 714 aaPredicted RBP22.09■■□□□ 1.13
SHMT1-209ENST00000582653 MIA3Q5JRA6 1907 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 SCN1AP35498 2009 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 FAM186AA6NE01 2351 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 HEPACAM2A8MVW5 462 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 KPNA7A9QM74 516 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 FGF19O95750 216 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 LDHAP00338 332 aaKnown RBP22.08■■□□□ 1.13
SHMT1-209ENST00000582653 F13A1P00488 732 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 CSTF1Q05048 431 aaKnown RBP22.08■■□□□ 1.13
SHMT1-209ENST00000582653 MAMSTRQ6ZN01 415 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 ITIH5Q86UX2 942 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 TRIM9Q9C026 710 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 SLITRK6Q9H5Y7 841 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 TMEM206Q9H813 350 aa22.08■■□□□ 1.13
SHMT1-209ENST00000582653 EXTL3O43909 919 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 ITGB3P05106 788 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 POLR2BP30876 1174 aaKnown RBP22.07■■□□□ 1.12
SHMT1-209ENST00000582653 SMARCB1Q12824 385 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 GAREM2Q75VX8 874 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 LRRTM3Q86VH5 581 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 SUMF1Q8NBK3 374 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 NELL1Q92832 810 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 LRRC27Q9C0I9 530 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 CUEDC2Q9H467 287 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 PDE11AQ9HCR9 933 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 AGAP1Q9UPQ3 857 aa22.07■■□□□ 1.12
SHMT1-209ENST00000582653 TSC2P49815 1807 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 ARNTLO00327 626 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 CHADO15335 359 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 KINO60870 393 aaKnown RBP22.06■■□□□ 1.12
SHMT1-209ENST00000582653 CASP1P29466 404 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 HOXD13P35453 343 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 ASIC1P78348 528 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 FOXK2Q01167 660 aa22.06■■□□□ 1.12
SHMT1-209ENST00000582653 FCHO2Q0JRZ9 810 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms