RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 E2F4Q16254 413 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 SPECC1Q5M775 1068 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 ASCL5Q7RTU5 278 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 METTL23Q86XA0 190 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 CCDC65Q8IXS2 484 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 ZNF687Q8N1G0 1237 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 LEO1Q8WVC0 666 aaPredicted RBP15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 ING5Q8WYH8 240 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 NELL1Q92832 810 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 TCEAL4Q96EI5 215 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 ZNF396Q96N95 335 aaPredicted RBP15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 FAM126AQ9BYI3 521 aaPredicted RBP15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 DNAJC25Q9H1X3 360 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 KIAA1586Q9HCI6 787 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 GDAP2Q9NXN4 497 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 ITGA11Q9UKX5 1188 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 DCHS1Q96JQ0 3298 aa15.66■□□□□ 0.1
SMARCE1-216ENST00000580419 GPR179Q6PRD1 2367 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 CEP250Q9BV73 2442 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 KPNA7A9QM74 516 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 CYB561D2O14569 222 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 PPEF2O14830 753 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 SPTLC2O15270 562 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 EIF3DO15371 548 aaKnown RBP eCLIP15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 EXTL3O43909 919 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 SURF1Q15526 300 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 DPH6Q7L8W6 267 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 FRMD5Q7Z6J6 570 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 EFCAB13Q8IY85 973 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 TMEM86AQ8N2M4 240 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 SHKBP1Q8TBC3 707 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 FAM212AQ96EL1 285 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 CEP295NLQ96MC4 621 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 PYM1Q9BRP8 204 aaKnown RBP15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 PLA2G2FQ9BZM2 168 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 BRD9Q9H8M2 597 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 ABCB6Q9NP58 842 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 PANK4Q9NVE7 773 aa15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 TIMM13Q9Y5L4 95 aaPredicted RBP15.65■□□□□ 0.1
SMARCE1-216ENST00000580419 SHISA7A6NL88 538 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 FAM170BA6NMN3 283 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 TISP43B9A030 160 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 ARNTLO00327 626 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 CHADO15335 359 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 CUTAO60888 179 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 GCNT3O95395 438 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 DCNP07585 359 aaKnown RBP15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 SP9P0CG40 484 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 GUCY2FP51841 1108 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 STK38Q15208 465 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 NFE2Q16621 373 aaPredicted RBP15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 FAM173BQ6P4H8 233 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 VITQ6UXI7 678 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 LIMS2Q7Z4I7 341 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 DNAJB7Q7Z6W7 309 aaPredicted RBP15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 DCP1BQ8IZD4 617 aaKnown RBP15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 IQUBQ8NA54 791 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 OR10T2Q8NGX3 314 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 CXorf38Q8TB03 319 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 ZSCAN18Q8TBC5 510 aaPredicted RBP15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 ACBD6Q9BR61 282 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 FOXQ1Q9C009 403 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 TRIM9Q9C026 710 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 CRISPLD1Q9H336 500 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 ZNF334Q9HCZ1 680 aaPredicted RBP15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 PCDHGA2Q9Y5H1 932 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 DMXL1Q9Y485 3027 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 UBE4BO95155 1302 aa15.64■□□□□ 0.09
SMARCE1-216ENST00000580419 KIF26AQ9ULI4 1882 aaPredicted RBP15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 TICRRQ7Z2Z1 1910 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 A0A087X0B3 334 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 LMNAP02545 664 aaKnown RBP15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 FAM163BP0C2L3 166 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 CDC25CP30307 473 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 FOXK2Q01167 660 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 KCNA1Q09470 495 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 FZD5Q13467 585 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 VEPH1Q14D04 833 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 TPRG1Q6ZUI0 275 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 GAREM2Q75VX8 874 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 MAML2Q8IZL2 1156 aaPredicted RBP15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 HS6ST3Q8IZP7 471 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 SYCP3Q8IZU3 236 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 ATAD1Q8NBU5 361 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 KCNG4Q8TDN1 519 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 TMEM174Q8WUU8 243 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 ZSWIM3Q96MP5 696 aa15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 C8orf33Q9H7E9 229 aaPredicted RBP15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 RBAKQ9NYW8 714 aaPredicted RBP15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 CGNQ9P2M7 1197 aaKnown RBP15.63■□□□□ 0.09
SMARCE1-216ENST00000580419 ZNF263O14978 683 aa15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 LAMTOR5O43504 91 aa15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 MYL4P12829 197 aa15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 IDEP14735 1019 aa15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 DDX6P26196 483 aaKnown RBP eCLIP15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 CASP5P51878 434 aa15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 PLCB2Q00722 1185 aa15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 CEBPZQ03701 1054 aaKnown RBP15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 EHHADHQ08426 723 aa15.62■□□□□ 0.09
SMARCE1-216ENST00000580419 ARHGAP15Q53QZ3 475 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms