RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 RCCD1A6NED2 376 aa26.8■■□□□ 1.88
SHMT1-207ENST00000580002 ZBBXA8MT70 800 aa26.8■■□□□ 1.88
SHMT1-207ENST00000580002 PDGFRBP09619 1106 aa26.8■■□□□ 1.88
SHMT1-207ENST00000580002 BRD2P25440 801 aaKnown RBP26.8■■□□□ 1.88
SHMT1-207ENST00000580002 FMO1Q01740 532 aa26.8■■□□□ 1.88
SHMT1-207ENST00000580002 DDX27Q96GQ7 796 aaKnown RBP26.8■■□□□ 1.88
SHMT1-207ENST00000580002 FAM193BQ96PV7 902 aaPredicted RBP26.8■■□□□ 1.88
SHMT1-207ENST00000580002 HTATIP2Q9BUP3 242 aa26.8■■□□□ 1.88
SHMT1-207ENST00000580002 DPEP3Q9H4B8 488 aa26.8■■□□□ 1.88
SHMT1-207ENST00000580002 PUF60Q9UHX1 559 aaKnown RBP26.8■■□□□ 1.88
SHMT1-207ENST00000580002 PPP2R2CQ9Y2T4 447 aa26.8■■□□□ 1.88
SHMT1-207ENST00000580002 BZW2Q9Y6E2 419 aaKnown RBP26.8■■□□□ 1.88
SHMT1-207ENST00000580002 EIF3CLB5ME19 914 aaKnown RBP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 AMHP03971 560 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 PFKMP08237 780 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 CYLC1P35663 651 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 SLC11A1P49279 550 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 DCLRE1AQ6PJP8 1040 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 DSTYKQ6XUX3 929 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 FAXDC2Q96IV6 333 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 EIF3CQ99613 913 aaKnown RBP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 SEPT11Q9NVA2 429 aaKnown RBP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 BARX2Q9UMQ3 279 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 FNDC1Q4ZHG4 1894 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 NRP1O14786 923 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 TNFAIP3P21580 790 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 GNA15P30679 374 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 AARSP49588 968 aaKnown RBP eCLIP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 INCA1Q0VD86 236 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 CCDC142Q17RM4 750 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 FAM43BQ6ZT52 329 aaPredicted RBP26.79■■□□□ 1.88
SHMT1-207ENST00000580002 OR6B3Q8NGW1 331 aa26.79■■□□□ 1.88
SHMT1-207ENST00000580002 TMCO5BA8MYB1 307 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 ESPNB1AK53 854 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 HUS1O60921 280 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 CCDC172P0C7W6 258 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 PDE6CP51160 858 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 SLC18A3Q16572 532 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 TMEM173Q86WV6 379 aaPredicted RBP26.78■■□□□ 1.88
SHMT1-207ENST00000580002 REXO1L1PQ8IX06 675 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 CCAR2Q8N163 923 aaKnown RBP26.78■■□□□ 1.88
SHMT1-207ENST00000580002 APPL2Q8NEU8 664 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 ZNF689Q96CS4 500 aaPredicted RBP26.78■■□□□ 1.88
SHMT1-207ENST00000580002 UROC1Q96N76 676 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 PACSIN1Q9BY11 444 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 NENFQ9UMX5 172 aa26.78■■□□□ 1.88
SHMT1-207ENST00000580002 HOXA2O43364 376 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 THAP12O43422 761 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 LCA5LO95447 670 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 BCAR1P56945 870 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 ADGRF2Q8IZF7 708 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 C12orf29Q8N999 325 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 ZNF606Q8WXB4 792 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 TMEM176AQ96HP8 235 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 CWH43Q9H720 699 aa26.77■■□□□ 1.88
SHMT1-207ENST00000580002 CDR2Q01850 454 aa26.76■■□□□ 1.88
SHMT1-207ENST00000580002 ACOT1Q86TX2 421 aa26.76■■□□□ 1.88
SHMT1-207ENST00000580002 BCL7CQ8WUZ0 217 aaPredicted RBP26.76■■□□□ 1.88
SHMT1-207ENST00000580002 RSPH1Q8WYR4 309 aa26.76■■□□□ 1.88
SHMT1-207ENST00000580002 RC3H2Q9HBD1 1191 aaKnown RBP26.76■■□□□ 1.88
SHMT1-207ENST00000580002 TRIM10Q9UDY6 481 aa26.76■■□□□ 1.88
SHMT1-207ENST00000580002 NAGPAQ9UK23 515 aa26.76■■□□□ 1.88
SHMT1-207ENST00000580002 ATP2C2O75185 946 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 TACC1O75410 805 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 GALTP07902 379 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 CD19P15391 556 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 ACAT1P24752 427 aaKnown RBP26.76■■□□□ 1.87
SHMT1-207ENST00000580002 GNL1P36915 607 aaPredicted RBP26.76■■□□□ 1.87
SHMT1-207ENST00000580002 KCNJ6P48051 423 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 YWHAEP62258 255 aaKnown RBP26.76■■□□□ 1.87
SHMT1-207ENST00000580002 KIAA0319Q5VV43 1072 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 PASD1Q8IV76 773 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 TOP6BLQ8N6T0 577 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 MARCH5Q9NX47 278 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 PCDHA13Q9Y5I0 950 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 PTPRSQ13332 1948 aa26.76■■□□□ 1.87
SHMT1-207ENST00000580002 A8MXQ7 604 aa26.75■■□□□ 1.87
SHMT1-207ENST00000580002 BAIAP3O94812 1187 aa26.75■■□□□ 1.87
SHMT1-207ENST00000580002 BMS1Q14692 1282 aaKnown RBP26.75■■□□□ 1.87
SHMT1-207ENST00000580002 CCDC122Q5T0U0 273 aa26.75■■□□□ 1.87
SHMT1-207ENST00000580002 DPH6Q7L8W6 267 aa26.75■■□□□ 1.87
SHMT1-207ENST00000580002 PPP1R13BQ96KQ4 1090 aa26.75■■□□□ 1.87
SHMT1-207ENST00000580002 HEXIM2Q96MH2 286 aaKnown RBP26.75■■□□□ 1.87
SHMT1-207ENST00000580002 LACRTQ9GZZ8 138 aa26.75■■□□□ 1.87
SHMT1-207ENST00000580002 ALKBH5Q6P6C2 394 aaKnown RBP26.74■■□□□ 1.87
SHMT1-207ENST00000580002 FMNL3Q8IVF7 1028 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 CYFIP2Q96F07 1278 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 NT5C1AQ9BXI3 368 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 DUSP10Q9Y6W6 482 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 ALDH2P05091 517 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 WARSP23381 471 aaKnown RBP26.74■■□□□ 1.87
SHMT1-207ENST00000580002 MSNP26038 577 aaKnown RBP26.74■■□□□ 1.87
SHMT1-207ENST00000580002 BPIFB4P59827 614 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 LRRC43Q8N309 656 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 B3GALT6Q96L58 329 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 RTP3Q9BQQ7 232 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 MRPL9Q9BYD2 267 aaKnown RBP26.74■■□□□ 1.87
SHMT1-207ENST00000580002 SNX25Q9H3E2 840 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 STXBP5LQ9Y2K9 1186 aa26.74■■□□□ 1.87
SHMT1-207ENST00000580002 FAN1Q9Y2M0 1017 aa26.74■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms