RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 IP6K1Q92551 441 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 FATE1Q969F0 183 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 RILPL2Q969X0 211 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 CDCA5Q96FF9 252 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 HEPHQ9BQS7 1158 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 NUDT16L1Q9BRJ7 211 aaKnown RBP6.58□□□□□ -1.36
VPS53-219ENST00000576019 CNPPD1Q9BV87 410 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 AP1M1Q9BXS5 423 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 STK31Q9BXU1 1019 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 FBXO10Q9UK96 956 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 SIK3Q9Y2K2 1263 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 PCDHA3Q9Y5H8 950 aa6.58□□□□□ -1.36
VPS53-219ENST00000576019 DMDP11532 3685 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 USP9XQ93008 2570 aaPredicted RBP6.57□□□□□ -1.36
VPS53-219ENST00000576019 ANKRD18BA2A2Z9 1011 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 GNAT3A8MTJ3 354 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 OIP5O43482 229 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 PRLP01236 227 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 CAPN2P17655 700 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 XBP1P17861 261 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 FGFR2P21802 821 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 SERPINF1P36955 418 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 CREMQ03060 361 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 UVSSAQ2YD98 709 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 AKNAD1Q5T1N1 836 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 STEAP3Q658P3 488 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 SLFN12LQ6IEE8 588 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 TMC6Q7Z403 805 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 GALNT5Q7Z7M9 940 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 ATP11CQ8NB49 1132 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 UCMAQ8WVF2 138 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 NELL1Q92832 810 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 IRAK4Q9NWZ3 460 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 FBLN5Q9UBX5 448 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 ABCF2Q9UG63 623 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 NARFQ9UHQ1 456 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 TONSLQ96HA7 1378 aa6.57□□□□□ -1.36
VPS53-219ENST00000576019 FSD2A1L4K1 749 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 PRAMEF22A3QJZ6 481 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 FAM181BA6NEQ2 426 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 ISM1B1AKI9 464 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 IGF2BP3O00425 579 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS53-219ENST00000576019 SGPL1O95470 568 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 ENDOUP21128 410 aaKnown RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 CTSSP25774 331 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 RPL10P27635 214 aaKnown RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 RGS3P49796 1198 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 EPHA5P54756 1037 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 INHBEP58166 350 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 SRSF11Q05519 484 aaKnown RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 CXCL9Q07325 125 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 PPP3CAQ08209 521 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 FOXO1Q12778 655 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 NOMO1Q15155 1222 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 C3orf38Q5JPI3 329 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 MROH9Q5TGP6 573 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 PRAMEF18Q5VWM3 479 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 LIN54Q6MZP7 749 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 SHISA2Q6UWI4 295 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 RINLQ6ZS11 566 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 ANKRD23Q86SG2 305 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 RHOT1Q8IXI2 618 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 GLB1L3Q8NCI6 653 aaPredicted RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 IPO4Q8TEX9 1081 aaKnown RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 RAPGEF4Q8WZA2 1011 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 CENPIQ92674 756 aaPredicted RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 DCPSQ96C86 337 aaKnown RBP6.56□□□□□ -1.36
VPS53-219ENST00000576019 UIMC1Q96RL1 719 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 CEP41Q9BYV8 373 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 HELLSQ9NRZ9 838 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 SACM1LQ9NTJ5 587 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 ANKEF1Q9NU02 776 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 MYO1AQ9UBC5 1043 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 DUSP13Q9UII6 198 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 SYNPO2Q9UMS6 1093 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 TTLL3Q9Y4R7 772 aa6.56□□□□□ -1.36
VPS53-219ENST00000576019 SOS1Q07889 1333 aaPredicted RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 MYPNQ86TC9 1320 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 FAM95CA0A1B0GW59 222 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 SYNDIG1LA6NDD5 238 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 SOAT2O75908 522 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 TNFRSF6BO95407 300 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 NCAM1P13591 858 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 TYRP14679 529 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 MAP4P27816 1152 aaKnown RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 AFMP43652 599 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 HTRA4P83105 476 aaPredicted RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 SPARCL1Q14515 664 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 SURF1Q15526 300 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 NFKBIBQ15653 356 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 FAM110CQ1W6H9 321 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 FBXO47Q5MNV8 452 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 HLA-DQA1Q5Y7H0 255 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 ZKSCAN2Q63HK3 967 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 SULT6B1Q6IMI4 303 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 INTS5Q6P9B9 1019 aaKnown RBP6.55□□□□□ -1.36
VPS53-219ENST00000576019 BTNL9Q6UXG8 535 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 DSTYKQ6XUX3 929 aa6.55□□□□□ -1.36
VPS53-219ENST00000576019 MOB2Q70IA6 237 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms