RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CACNG4Q9UBN1 327 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 PUF60Q9UHX1 559 aaKnown RBP14.59□□□□□ -0.07
CCDC40-209ENST00000573474 INTUQ9ULD6 942 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 ATP8B3O60423 1300 aa14.59□□□□□ -0.07
CCDC40-209ENST00000573474 SCN1AP35498 2009 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 A0A0U1RQJ8 604 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 RCCD1A6NED2 376 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 MED7O43513 233 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 RTN2O75298 545 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 B3GAT3O94766 335 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 DDHD2O94830 711 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 TUBB4AP04350 444 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 H2AFZP0C0S5 128 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 WARSP23381 471 aaKnown RBP14.58□□□□□ -0.08
CCDC40-209ENST00000573474 GNL1P36915 607 aaPredicted RBP14.58□□□□□ -0.08
CCDC40-209ENST00000573474 AARSP49588 968 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC40-209ENST00000573474 CLEC16AQ2KHT3 1053 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC40-209ENST00000573474 NYAP1Q6ZVC0 841 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 H2AFVQ71UI9 128 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 ZNF280BQ86YH2 543 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 COLGALT2Q8IYK4 626 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 TMEM86AQ8N2M4 240 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 PDCL2Q8N4E4 241 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 TET1Q8NFU7 2136 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 OR6B3Q8NGW1 331 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 ATRIPQ8WXE1 791 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 TWNKQ96RR1 684 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 PAAF1Q9BRP4 392 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 MRPL9Q9BYD2 267 aaKnown RBP14.58□□□□□ -0.08
CCDC40-209ENST00000573474 LACRTQ9GZZ8 138 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 ISCUQ9H1K1 167 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 IL23AQ9NPF7 189 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 L1RE1Q9UN81 338 aa14.58□□□□□ -0.08
CCDC40-209ENST00000573474 ARHGEF37A1IGU5 675 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 TBKBP1A7MCY6 615 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 A8MXQ7 604 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 TMCO5BA8MYB1 307 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 KIF2AO00139 706 aaPredicted RBP14.57□□□□□ -0.08
CCDC40-209ENST00000573474 BAIAP3O94812 1187 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 AMHP03971 560 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 VDRP11473 427 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 CD19P15391 556 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 IGFBP6P24592 240 aaPredicted RBP14.57□□□□□ -0.08
CCDC40-209ENST00000573474 BRD2P25440 801 aaKnown RBP14.57□□□□□ -0.08
CCDC40-209ENST00000573474 PPIGQ13427 754 aaKnown RBP eCLIP14.57□□□□□ -0.081e-11■■■□□ 17.5
CCDC40-209ENST00000573474 ACAD10Q6JQN1 1059 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 PPP1R2P3Q6NXS1 205 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 CD300LGQ6UXG3 332 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 PALB2Q86YC2 1186 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 ADGRF2Q8IZF7 708 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 C3orf58Q8NDZ4 430 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 SPATA18Q8TC71 538 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 KBTBD7Q8WVZ9 684 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 RABGGTAQ92696 567 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 HEXIM2Q96MH2 286 aaKnown RBP14.57□□□□□ -0.08
CCDC40-209ENST00000573474 HMGXB4Q9UGU5 601 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 PCDHGC3Q9UN70 934 aa14.57□□□□□ -0.08
CCDC40-209ENST00000573474 TTC3P53804 2025 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 ANKRD62A6NC57 917 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 BTNL10A8MVZ5 291 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 TMEM189-UBE2V1I3L0A0 370 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 KIF5CO60282 957 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 LSM8O95777 96 aaKnown RBP14.56□□□□□ -0.08
CCDC40-209ENST00000573474 FTLP02792 175 aaPredicted RBP14.56□□□□□ -0.08
CCDC40-209ENST00000573474 CYP1A1P04798 512 aaPredicted RBP14.56□□□□□ -0.08
CCDC40-209ENST00000573474 OR1G1P47890 313 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 LHX1P48742 406 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 GATMP50440 423 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 GALCP54803 685 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 ORC1Q13415 861 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 STILQ15468 1287 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 CNGA2Q16280 664 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 TIGD5Q53EQ6 642 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 SGO2Q562F6 1265 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 WSCD1Q658N2 575 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 CRYBG2Q8N1P7 616 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 TFAP2BQ92481 460 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 TOP1MTQ969P6 601 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 C16orf45Q96MC5 204 aaPredicted RBP14.56□□□□□ -0.08
CCDC40-209ENST00000573474 ZSWIM1Q9BR11 485 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 TMEM175Q9BSA9 504 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 PACSIN1Q9BY11 444 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 NRDE2Q9H7Z3 1164 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 RRAGDQ9NQL2 400 aaPredicted RBP14.56□□□□□ -0.08
CCDC40-209ENST00000573474 TAS2R14Q9NYV8 317 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 DSEQ9UL01 958 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 GUCA1BQ9UMX6 200 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 TFR2Q9UP52 801 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 STXBP5LQ9Y2K9 1186 aa14.56□□□□□ -0.08
CCDC40-209ENST00000573474 M0QZQ0 153 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 GABRDO14764 452 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 B4GALT3O60512 393 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 DGKIO75912 1065 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 UPP2O95045 317 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 ABL1P00519 1130 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 ALDH2P05091 517 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 CFHP08603 1231 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 PDGFRBP09619 1106 aa14.55□□□□□ -0.08
CCDC40-209ENST00000573474 TMEM253P0C7T8 217 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 676.4 ms