RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 DEFB132Q7Z7B7 95 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 ZBTB33Q86T24 672 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 ALLCQ8N6M5 410 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 MAML1Q92585 1016 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 MCEEQ96PE7 176 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 MTMR12Q9C0I1 747 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 ACTL7BQ9Y614 415 aa24.09■■□□□ 1.45
VPS53-211ENST00000571805 CHUKO15111 745 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 PEX10O60683 326 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 STAT5BP51692 787 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 CCDC142Q17RM4 750 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 NUGGCQ68CJ6 796 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 CCHCR1Q8TD31 782 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 CISHQ9NSE2 258 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 ZNF148Q9UQR1 794 aa24.08■■□□□ 1.45
VPS53-211ENST00000571805 DRG1Q9Y295 367 aaKnown RBP24.08■■□□□ 1.45
VPS53-211ENST00000571805 FZD9O00144 591 aa24.08■■□□□ 1.44
VPS53-211ENST00000571805 TOM1L1O75674 476 aa24.08■■□□□ 1.44
VPS53-211ENST00000571805 ATF7P17544 494 aaPredicted RBP24.08■■□□□ 1.44
VPS53-211ENST00000571805 DNAJC24Q6P3W2 148 aa24.08■■□□□ 1.44
VPS53-211ENST00000571805 SRRM1Q8IYB3 904 aaKnown RBP24.08■■□□□ 1.44
VPS53-211ENST00000571805 GDAP1Q8TB36 358 aa24.08■■□□□ 1.44
VPS53-211ENST00000571805 MGRN1O60291 552 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 ETS1P14921 441 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 GCAP28676 217 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 PTPN7P35236 360 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 COPS2P61201 443 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 CEP128Q6ZU80 1094 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 FAM228AQ86W67 206 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 APOBEC3FQ8IUX4 373 aaKnown RBP24.07■■□□□ 1.44
VPS53-211ENST00000571805 TMEM35BQ8NCS4 154 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 RGS17Q9UGC6 210 aaPredicted RBP24.07■■□□□ 1.44
VPS53-211ENST00000571805 EFNA5P52803 228 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 ZNF394Q53GI3 561 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 CYP4F22Q6NT55 531 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 ACO2Q99798 780 aaKnown RBP24.07■■□□□ 1.44
VPS53-211ENST00000571805 ZNF518BQ9C0D4 1074 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 NIF3L1Q9GZT8 377 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 SAYSD1Q9NPB0 183 aa24.07■■□□□ 1.44
VPS53-211ENST00000571805 WDR90Q96KV7 1748 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 hCG_1818297A0A087WSY0 165 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 ABLIM1O14639 778 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 CDH5P33151 784 aaPredicted RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 ARSEP51690 589 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 OASLQ15646 514 aaKnown RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 SH3D19Q5HYK7 790 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 NOL9Q5SY16 702 aaKnown RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 ZFYVE27Q5T4F4 411 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 GPAT2Q6NUI2 795 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 DCUN1D2Q6PH85 259 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 POTEAQ6S8J7 498 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 RIBC1Q8N443 379 aaPredicted RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 TFAP2BQ92481 460 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 TCHPQ9BT92 498 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 MRPL4Q9BYD3 311 aaKnown RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 TPX2Q9ULW0 747 aaKnown RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 EDNRBP24530 442 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 ELF3P78545 371 aaPredicted RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 SNCBQ16143 134 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 SGSM1Q2NKQ1 1148 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 FAM133BQ5BKY9 247 aaKnown RBP24.06■■□□□ 1.44
VPS53-211ENST00000571805 ARHGEF18Q6ZSZ5 1173 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 CFAP57Q96MR6 1250 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 PCDHGC3Q9UN70 934 aa24.06■■□□□ 1.44
VPS53-211ENST00000571805 SSC5DA1L4H1 1573 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 SOWAHBA6NEL2 793 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 PECAM1P16284 738 aaPredicted RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 CDKN2BP42772 138 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 PIGHQ14442 188 aaPredicted RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 DUOXA2Q1HG44 320 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 WDR72Q3MJ13 1102 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 GALNTL6Q49A17 601 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 FAM160B1Q5W0V3 765 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 CDCA2Q69YH5 1023 aaPredicted RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 NIPA2Q8N8Q9 360 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 ACSF2Q96CM8 615 aaPredicted RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 MAGEB18Q96M61 343 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 PRKAG3Q9UGI9 489 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 CPSF3Q9UKF6 684 aaKnown RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 AGAP1Q9UPQ3 857 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 OGTO15294 1046 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 SUN1O94901 812 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 UBOX5O94941 541 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 EIF4BP23588 611 aaKnown RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 STX2P32856 288 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 TCF7P36402 384 aaPredicted RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 VCPP55072 806 aaKnown RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 GPS1Q13098 491 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 TFDP3Q5H9I0 405 aa24.05■■□□□ 1.44
VPS53-211ENST00000571805 NKD2Q969F2 451 aaPredicted RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 TGS1Q96RS0 853 aaKnown RBP24.05■■□□□ 1.44
VPS53-211ENST00000571805 WEE2P0C1S8 567 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 TAP1Q03518 808 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 ADCY1Q08828 1119 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 MKRN3Q13064 507 aaKnown RBP24.04■■□□□ 1.44
VPS53-211ENST00000571805 CGB2Q6NT52 195 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 LBX2Q6XYB7 198 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 SPATA21Q7Z572 469 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 NKIRAS1Q9NYS0 192 aa24.04■■□□□ 1.44
VPS53-211ENST00000571805 BTBD7Q9P203 1132 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms