RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 UBALD2Q8IYN6 164 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 KREMEN2Q8NCW0 462 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 CXorf38Q8TB03 319 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 MICAL1Q8TDZ2 1067 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 FAXDC2Q96IV6 333 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 CDCA3Q99618 268 aaPredicted RBP22.13■■□□□ 1.13
VPS53-210ENST00000571456 GPR62Q9BZJ7 368 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 IMPG2Q9BZV3 1241 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 VRTNQ9H8Y1 702 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 GDAP2Q9NXN4 497 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 PCDHB8Q9UN66 801 aa22.13■■□□□ 1.13
VPS53-210ENST00000571456 KPNA7A9QM74 516 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 KRT37O76014 449 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 ODC1P11926 461 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 EEF1GP26641 437 aaKnown RBP22.12■■□□□ 1.13
VPS53-210ENST00000571456 DLG4P78352 724 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 TCERG1LQ5VWI1 586 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 LMBRD2Q68DH5 695 aaPredicted RBP22.12■■□□□ 1.13
VPS53-210ENST00000571456 DSTYKQ6XUX3 929 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 ANKS3Q6ZW76 656 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 SV2AQ7L0J3 742 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 DPH6Q7L8W6 267 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 TRIM59Q8IWR1 403 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 MRPL43Q8N983 215 aaKnown RBP22.12■■□□□ 1.13
VPS53-210ENST00000571456 CCDC150Q8NCX0 1101 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 PIK3R5Q8WYR1 880 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 ZNF516Q92618 1163 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 SLC35C1Q96A29 364 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 EEF2KMTQ96G04 330 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 MED15Q96RN5 788 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 FUCA2Q9BTY2 467 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 VN1R3Q9BXE9 311 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 EMILIN2Q9BXX0 1053 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 DNAJC25Q9H1X3 360 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 CACNG4Q9UBN1 327 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 SIX4Q9UIU6 781 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 PCDHGC5Q9Y5F6 944 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 VWA8A3KMH1 1905 aa22.12■■□□□ 1.13
VPS53-210ENST00000571456 SMTNL1A8MU46 457 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 H7C4K7 107 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 MXI1P50539 228 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 GUCY2FP51841 1108 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 RBM10P98175 930 aaKnown RBP22.11■■□□□ 1.13
VPS53-210ENST00000571456 MTMR3Q13615 1198 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 SGSM1Q2NKQ1 1148 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 DCAF17Q5H9S7 520 aaPredicted RBP22.11■■□□□ 1.13
VPS53-210ENST00000571456 C1orf220Q5T0J3 134 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 KIAA0319Q5VV43 1072 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 TDRD10Q5VZ19 366 aaKnown RBP22.11■■□□□ 1.13
VPS53-210ENST00000571456 ASTLQ6HA08 431 aaPredicted RBP22.11■■□□□ 1.13
VPS53-210ENST00000571456 DGLUCYQ7Z3D6 616 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 PPFIBP1Q86W92 1011 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 HASPINQ8TF76 798 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 RABGGTAQ92696 567 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 HPDLQ96IR7 371 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 CNOT6LQ96LI5 555 aaKnown RBP22.11■■□□□ 1.13
VPS53-210ENST00000571456 FNIP2Q9P278 1114 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 NFE2L3Q9Y4A8 694 aa22.11■■□□□ 1.13
VPS53-210ENST00000571456 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.11■■□□□ 1.13
VPS53-210ENST00000571456 SPTBN2O15020 2390 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 F8W810 466 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 PER2O15055 1255 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 CXCL14O95715 111 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 CYP11A1P05108 521 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 P4HA1P13674 534 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 ERVFC1P60507 584 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 NCOA4Q13772 614 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 PTPN14Q15678 1187 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 ANO6Q4KMQ2 910 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 C11orf57Q6ZUT1 292 aaPredicted RBP22.1■■□□□ 1.13
VPS53-210ENST00000571456 TMEM86AQ8N2M4 240 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 TOP6BLQ8N6T0 577 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 ANKRD20A12PQ8NF67 263 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 VN1R2Q8NFZ6 395 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 RMDN1Q96DB5 314 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 FAM124BQ9H5Z6 455 aaPredicted RBP22.1■■□□□ 1.13
VPS53-210ENST00000571456 RXFP1Q9HBX9 757 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 SORCS3Q9UPU3 1222 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 BACE2Q9Y5Z0 518 aa22.1■■□□□ 1.13
VPS53-210ENST00000571456 HUS1O60921 280 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 LILRB3O75022 631 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 TRIM49P0CI25 452 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 TRIM49CP0CI26 452 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 SP100P23497 879 aaPredicted RBP22.09■■□□□ 1.13
VPS53-210ENST00000571456 BRCC3P46736 316 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 GCLMP48507 274 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 ZNF165P49910 485 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 PPP3CAQ08209 521 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 METTL23Q86XA0 190 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 FBXL13Q8NEE6 735 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 SENP8Q96LD8 212 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 COQ4Q9Y3A0 265 aa22.09■■□□□ 1.13
VPS53-210ENST00000571456 C2orf71A6NGG8 1288 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 PPEF2O14830 753 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 OAZ2O95190 189 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 ADH1AP07327 375 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 TPM2P07951 284 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 PIK3CAP42336 1068 aa22.08■■□□□ 1.13
VPS53-210ENST00000571456 YWHAHQ04917 246 aaPredicted RBP22.08■■□□□ 1.13
VPS53-210ENST00000571456 DUSP6Q16828 381 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms