RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 AKAP13Q12802 2813 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 ARHGEF35A5YM69 484 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 CFIP05156 583 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 OR4Q2P0C623 313 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 GRM5P41594 1212 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 TXKP42681 527 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 CYP4F8P98187 520 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 SCAPQ12770 1279 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 ZNF423Q2M1K9 1284 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 LMBRD2Q68DH5 695 aaPredicted RBP12.08□□□□□ -0.48
VPS53-207ENST00000570510 TRIM68Q6AZZ1 485 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 ANO7Q6IWH7 933 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 LRIG1Q96JA1 1093 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 SPACA7Q96KW9 195 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 AIFM3Q96NN9 605 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 GTPBP2Q9BX10 602 aaKnown RBP12.08□□□□□ -0.48
VPS53-207ENST00000570510 LRRC3Q9BY71 257 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 CCDC113Q9H0I3 377 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 EVLQ9UI08 416 aaPredicted RBP12.08□□□□□ -0.48
VPS53-207ENST00000570510 ZMYM5Q9UJ78 669 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 PCDHB9Q9Y5E1 797 aa12.08□□□□□ -0.48
VPS53-207ENST00000570510 TIMM13Q9Y5L4 95 aaPredicted RBP12.08□□□□□ -0.48
VPS53-207ENST00000570510 OR6C75A6NL08 312 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 ALDH1A2O94788 518 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 HARSP12081 509 aaKnown RBP12.07□□□□□ -0.48
VPS53-207ENST00000570510 ENGP17813 658 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 RPS6KB1P23443 525 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 U2AF2P26368 475 aaKnown RBP eCLIP12.07□□□□□ -0.48
VPS53-207ENST00000570510 DPP6P42658 865 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 EVCP57679 992 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 C19orf57Q0VDD7 668 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 GPR17Q13304 367 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 PADI6Q6TGC4 694 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 DSTYKQ6XUX3 929 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 ARMCX6Q7L4S7 300 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 CMTM8Q8IZV2 173 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 CPA6Q8N4T0 437 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 GLIS3Q8NEA6 775 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 BSNDQ8WZ55 320 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 C18orf25Q96B23 403 aaPredicted RBP12.07□□□□□ -0.48
VPS53-207ENST00000570510 SEPT5Q99719 369 aaPredicted RBP12.07□□□□□ -0.48
VPS53-207ENST00000570510 FAM83CQ9BQN1 747 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 KIFC3Q9BVG8 833 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 DNAJC25Q9H1X3 360 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 TNFSF13BQ9Y275 285 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 ARID2Q68CP9 1835 aa12.07□□□□□ -0.48
VPS53-207ENST00000570510 CCDC169A6NNP5 214 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 OPHN1O60890 802 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 SOAT2O75908 522 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 OAZ2O95190 189 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 KCNE1P15382 129 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 WEE1P30291 646 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 TUFMP49411 452 aaKnown RBP12.06□□□□□ -0.48
VPS53-207ENST00000570510 GFPT1Q06210 699 aaPredicted RBP12.06□□□□□ -0.48
VPS53-207ENST00000570510 NR1H3Q13133 447 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 HNRNPDQ14103 355 aaKnown RBP12.06□□□□□ -0.48
VPS53-207ENST00000570510 PDGFRLQ15198 375 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 NPY5RQ15761 445 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 MGAT5BQ3V5L5 792 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 NT5DC1Q5TFE4 455 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 CENPPQ6IPU0 288 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 ALKAL1Q6UXT8 129 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 SYT12Q8IV01 421 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 MAB21L3Q8N8X9 362 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 CEP120Q8N960 986 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 ATAD1Q8NBU5 361 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 SPRYD3Q8NCJ5 442 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 BEST2Q8NFU1 509 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 CD101Q93033 1021 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 CHFRQ96EP1 664 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 ZMAT2Q96NC0 199 aaKnown RBP12.06□□□□□ -0.48
VPS53-207ENST00000570510 FBRSL1Q9HCM7 1045 aaKnown RBP12.06□□□□□ -0.48
VPS53-207ENST00000570510 BRMS1Q9HCU9 246 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 HPS4Q9NQG7 708 aa12.06□□□□□ -0.48
VPS53-207ENST00000570510 ADAMTS20P59510 1910 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 NEMFO60524 1076 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 CDKL5O76039 1030 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 EDN1P05305 212 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 ARSAP15289 507 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 CYP11B2P19099 503 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 BCKDHBP21953 392 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 STK3Q13188 491 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 BYSLQ13895 437 aaKnown RBP12.05□□□□□ -0.48
VPS53-207ENST00000570510 C2orf27AQ580R0 203 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 XKR4Q5GH76 650 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 OVOS1Q6IE37 1185 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 TMEFF1Q8IYR6 380 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 ERMNQ8TAM6 284 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 KIFAP3Q92845 792 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 DRC1Q96MC2 740 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 POLR3CQ9BUI4 534 aaPredicted RBP12.05□□□□□ -0.48
VPS53-207ENST00000570510 SLC46A2Q9BY10 475 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 MRPL4Q9BYD3 311 aaKnown RBP12.05□□□□□ -0.48
VPS53-207ENST00000570510 CDT1Q9H211 546 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 KIF9Q9HAQ2 790 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 ZSWIM6Q9HCJ5 1215 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 TDP1Q9NUW8 608 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 CNTN3Q9P232 1028 aa12.05□□□□□ -0.48
VPS53-207ENST00000570510 BCCIPQ9P287 314 aaKnown RBP eCLIP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms