RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PLXND1Q9Y4D7 1925 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 CYSRT1A8MQ03 144 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 HOXD12P35452 270 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 ATXN3P54252 364 aaPredicted RBP19.77■□□□□ 0.76
CLK3-227ENST00000570296 YARSP54577 528 aaKnown RBP19.77■□□□□ 0.76
CLK3-227ENST00000570296 DUSP4Q13115 394 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 KRT32Q14532 448 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 NPY5RQ15761 445 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 ADCK5Q3MIX3 580 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 LPCAT2Q7L5N7 544 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 NEK8Q86SG6 692 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 ITIH5Q86UX2 942 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 SLFN12Q8IYM2 578 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 MDM1Q8TC05 714 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 CRISPLD1Q9H336 500 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 DKK4Q9UBT3 224 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 USP20Q9Y2K6 914 aa19.77■□□□□ 0.76
CLK3-227ENST00000570296 OPHN1O60890 802 aa19.76■□□□□ 0.75
CLK3-227ENST00000570296 OAZ2O95190 189 aa19.76■□□□□ 0.75
CLK3-227ENST00000570296 EDN1P05305 212 aa19.76■□□□□ 0.75
CLK3-227ENST00000570296 MCM4P33991 863 aa19.76■□□□□ 0.75
CLK3-227ENST00000570296 TRIM68Q6AZZ1 485 aa19.76■□□□□ 0.75
CLK3-227ENST00000570296 PGLYRP2Q96PD5 576 aa19.76■□□□□ 0.75
CLK3-227ENST00000570296 NAP1L4Q99733 375 aaKnown RBP19.76■□□□□ 0.75
CLK3-227ENST00000570296 MBD1Q9UIS9 605 aaPredicted RBP19.76■□□□□ 0.75
CLK3-227ENST00000570296 PTPRBP23467 1997 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 XRCC6P12956 609 aaKnown RBP eCLIP19.75■□□□□ 0.75
CLK3-227ENST00000570296 PLA2G2AP14555 144 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 KCNE1P15382 129 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 MARCKSP29966 332 aaPredicted RBP19.75■□□□□ 0.75
CLK3-227ENST00000570296 CDC25CP30307 473 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 GPR17Q13304 367 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 SPDYCQ5MJ68 293 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 PEAR1Q5VY43 1037 aaPredicted RBP19.75■□□□□ 0.75
CLK3-227ENST00000570296 ANO7Q6IWH7 933 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 MAEAQ7L5Y9 396 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 OLIG1Q8TAK6 271 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 EZH1Q92800 747 aaPredicted RBP19.75■□□□□ 0.75
CLK3-227ENST00000570296 BRF1Q92994 677 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 TBC1D32Q96NH3 1257 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 GCNAQ96QF7 691 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 CCDC94Q9BW85 323 aaPredicted RBP19.75■□□□□ 0.75
CLK3-227ENST00000570296 SMG9Q9H0W8 520 aaKnown RBP19.75■□□□□ 0.75
CLK3-227ENST00000570296 TMEM74BQ9NUR3 256 aa19.75■□□□□ 0.75
CLK3-227ENST00000570296 PCDH15Q96QU1 1955 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 CCNT1O60563 726 aaKnown RBP19.74■□□□□ 0.75
CLK3-227ENST00000570296 C1QL1O75973 258 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 BAG4O95429 457 aaKnown RBP19.74■□□□□ 0.75
CLK3-227ENST00000570296 PRB1P04280 392 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 LIG1P18858 919 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 GJA4P35212 333 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 GRM5P41594 1212 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 CYP4F8P98187 520 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 YWHAHQ04917 246 aaPredicted RBP19.74■□□□□ 0.75
CLK3-227ENST00000570296 PDGFRLQ15198 375 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 ATF7IP2Q5U623 682 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 LMBRD2Q68DH5 695 aaPredicted RBP19.74■□□□□ 0.75
CLK3-227ENST00000570296 CENPPQ6IPU0 288 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 TRIM22Q8IYM9 498 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 RASEFQ8IZ41 740 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 CMTM8Q8IZV2 173 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 DEPTORQ8TB45 409 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 ZMAT2Q96NC0 199 aaKnown RBP19.74■□□□□ 0.75
CLK3-227ENST00000570296 SLC46A2Q9BY10 475 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 SLC6A14Q9UN76 642 aa19.74■□□□□ 0.75
CLK3-227ENST00000570296 OR6C75A6NL08 312 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 FTH1P19P0C7X4 201 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 CD59P13987 128 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 ARSAP15289 507 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 U2AF2P26368 475 aaKnown RBP eCLIP19.73■□□□□ 0.75
CLK3-227ENST00000570296 PTGER3P43115 390 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 NAMPTP43490 491 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 PSMD2Q13200 908 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 TRIP6Q15654 476 aaKnown RBP19.73■□□□□ 0.75
CLK3-227ENST00000570296 NAIF1Q69YI7 327 aaPredicted RBP19.73■□□□□ 0.75
CLK3-227ENST00000570296 CC2D1AQ6P1N0 951 aaPredicted RBP19.73■□□□□ 0.75
CLK3-227ENST00000570296 Q6ZUG5 572 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 POTEDQ86YR6 584 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 MDGA1Q8NFP4 955 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 CEP76Q8TAP6 659 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 PIGOQ8TEQ8 1089 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 BSNDQ8WZ55 320 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 CD101Q93033 1021 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 SPACA7Q96KW9 195 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 GTPBP2Q9BX10 602 aaKnown RBP19.73■□□□□ 0.75
CLK3-227ENST00000570296 KIF9Q9HAQ2 790 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 HSFX1Q9UBD0 423 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 PILRBQ9UKJ0 227 aa19.73■□□□□ 0.75
CLK3-227ENST00000570296 M0QZQ0 153 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 MAP3K13O43283 966 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 CFIP05156 583 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 OR4Q2P0C623 313 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 AVPR1AP37288 418 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 P2RY2P41231 377 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 EFNA5P52803 228 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 GFPT1Q06210 699 aaPredicted RBP19.72■□□□□ 0.75
CLK3-227ENST00000570296 DUOXA1Q1HG43 343 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 NT5DC1Q5TFE4 455 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 LYSMD4Q5XG99 296 aa19.72■□□□□ 0.75
CLK3-227ENST00000570296 ARMCX6Q7L4S7 300 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms