RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 KDM3BQ7LBC6 1761 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 CYSRT1A8MQ03 144 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DCDC2CA8MYV0 355 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 H0Y626 953 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ZNF561-AS1K7EIQ3 104 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 FOXN3O00409 490 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 ELL2O00472 640 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 CPLX1O14810 134 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DAPK3O43293 454 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 AKR1B10O60218 316 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 FKTNO75072 461 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 SOCS5O75159 536 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DEAF1O75398 565 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 SKAP2O75563 359 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 BBOX1O75936 387 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 CAMTA2O94983 1202 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 TNFRSF6BO95407 300 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 TUBB4AP04350 444 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ITGA5P08648 1049 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ALOX12P18054 663 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 NFKB1P19838 968 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 PTX3P26022 381 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 WASP42768 502 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 TNNT3P45378 269 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 PDE6CP51160 858 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 RAB1AP62820 205 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 IL1RL1Q01638 556 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 KRTAP1-1Q07627 177 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 NFIAQ12857 509 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ADAM15Q13444 863 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ACVR2BQ13705 512 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 STARD3Q14849 445 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 SART3Q15020 963 aaKnown RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 CLUL1Q15846 466 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 GRIK5Q16478 980 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 FSCN1Q16658 493 aaKnown RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 IFI16Q16666 785 aaKnown RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 NUTM2GQ5VZR2 741 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ACAD10Q6JQN1 1059 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ALKBH5Q6P6C2 394 aaKnown RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 CNKSR3Q6P9H4 555 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 KLHDC10Q6PID8 442 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 IL27RAQ6UWB1 636 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 TTLL7Q6ZT98 887 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 BBS12Q6ZW61 710 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DHX32Q7L7V1 743 aaKnown RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 SDCCAG8Q86SQ7 713 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 LCA5Q86VQ0 697 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 VSIG10LQ86VR7 867 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 C12orf40Q86WS4 652 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 CEP97Q8IW35 865 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 SIRT2Q8IXJ6 389 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 SP8Q8IXZ3 490 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 GALNT4Q8N4A0 578 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DTWD1Q8N5C7 304 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 CAMKK1Q8N5S9 505 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 USP38Q8NB14 1042 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 AVL9Q8NBF6 648 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ZNF540Q8NDQ6 660 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 CYP2W1Q8TAV3 490 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 STYXQ8WUJ0 223 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 GIMAP1Q8WWP7 306 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 N4BP2L2Q92802 583 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 PTP4A1Q93096 173 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 PPP1R14AQ96A00 147 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ZNF333Q96JL9 665 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 CCDC140Q96MF4 163 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 UROC1Q96N76 676 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 UIMC1Q96RL1 719 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 IWS1Q96ST2 819 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ZFYVE21Q9BQ24 234 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 HEPHQ9BQS7 1158 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DDX23Q9BUQ8 820 aaKnown RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 CNPPD1Q9BV87 410 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ITPAQ9BY32 194 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 EPB41L4AQ9HCS5 686 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 XAB2Q9HCS7 855 aaKnown RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 COMMD8Q9NX08 183 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 DNAJC28Q9NX36 388 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 HOXC10Q9NYD6 342 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 THEGQ9P2T0 379 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ORC3Q9UBD5 711 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 HDAC5Q9UQL6 1122 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 CNPY2Q9Y2B0 182 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 ZKSCAN5Q9Y2L8 839 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 MTF2Q9Y483 593 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 ZFP37Q9Y6Q3 630 aaPredicted RBP3.34□□□□□ -1.87
VPS35-209ENST00000568642 WDR17Q8IZU2 1322 aa3.34□□□□□ -1.87
VPS35-209ENST00000568642 REV3LO60673 3130 aa3.34□□□□□ -1.88
VPS35-209ENST00000568642 COL4A5P29400 1685 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 ANKRD26Q9UPS8 1709 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 GVINP1Q7Z2Y8 2422 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 A0A087WZ62 844 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 CCDC154A6NI56 674 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 PRR33A8MZF0 331 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 IQCJ-SCHIP1C9J366 451 aaPredicted RBP3.33□□□□□ -1.88
VPS35-209ENST00000568642 INO80B-WBP1J3KQ70 363 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 APOL1O14791 398 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 FMO6PO60774 539 aa3.33□□□□□ -1.88
VPS35-209ENST00000568642 SRGAP2O75044 1071 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms