RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SUN5Q8TC36 379 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 PPP2R3CQ969Q6 453 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 SLC7A6OSQ96CW6 309 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 HVCN1Q96D96 273 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 WDR92Q96MX6 357 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 ZMAT2Q96NC0 199 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 RPS6KC1Q96S38 1066 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 SEMA4AQ9H3S1 761 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 MS4A5Q9H3V2 200 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 SYNCQ9H7C4 482 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 TCF7L2Q9NQB0 619 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 IP6K2Q9UHH9 426 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 DDX25Q9UHL0 483 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 XPO7Q9UIA9 1087 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 CFAP45Q9UL16 551 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 PAIP2BQ9ULR5 123 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 CORO1CQ9ULV4 474 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 TMCO1Q9UM00 188 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.56□□□□□ -1.84
VPS35-208ENST00000568612 LZTS1Q9Y250 596 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 PRELID1Q9Y255 219 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 CARD8Q9Y2G2 431 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 VWA7Q9Y334 891 aa3.56□□□□□ -1.84
VPS35-208ENST00000568612 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 SETD1BQ9UPS6 1966 aaKnown RBP3.56□□□□□ -1.84
VPS35-208ENST00000568612 CFAP74Q9C0B2 1584 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 EPRSP07814 1512 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 FAM135AQ9P2D6 1515 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 ATAD2BQ9ULI0 1458 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 NPATQ14207 1427 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 A0A087X0B3 334 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 LSM1O15116 133 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 SPTLC2O15270 562 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 P4HA2O15460 535 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 MGEA5O60502 916 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SKAP2O75563 359 aaPredicted RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 RAD17O75943 681 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 TMCC1O94876 653 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 CAVIN2O95810 425 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 TROVE2P10155 538 aaKnown RBP eCLIP3.55□□□□□ -1.84
VPS35-208ENST00000568612 CD53P19397 219 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 BTF3P20290 206 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 ACO1P21399 889 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 XPAP23025 273 aaPredicted RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 HSD3B2P26439 372 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 CNGA1P29973 690 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SLC8A1P32418 973 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 PIK3CAP42336 1068 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 KRTAP10-2P60368 255 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 NUCB1Q02818 461 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 HHEXQ03014 270 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 CBX3Q13185 183 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 TCIRG1Q13488 830 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 RIN1Q13671 783 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 LRRC32Q14392 662 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SMC1AQ14683 1233 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 GRM7Q14831 915 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SEPT2Q15019 361 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 PRKD1Q15139 912 aaPredicted RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 CEP85LQ5SZL2 805 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 THEMIS2Q5TEJ8 643 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 KAZNQ674X7 775 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 GALNT17Q6IS24 598 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 POLNQ7Z5Q5 900 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SPRED1Q7Z699 444 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SGMS1Q86VZ5 419 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 RAB11FIP4Q86YS3 637 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 WDR75Q8IWA0 830 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 BRSK2Q8IWQ3 736 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SLC15A3Q8IY34 581 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SYCP3Q8IZU3 236 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 ESX1Q8N693 406 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 ARL6IP6Q8N6S5 226 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 PLA2G15Q8NCC3 412 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 TRIM58Q8NG06 486 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 LILRB1Q8NHL6 650 aaPredicted RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 GSDMBQ8TAX9 411 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 CFHR4Q92496 578 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 MAML1Q92585 1016 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 LPPQ93052 612 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 ERP27Q96DN0 273 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 C8orf76Q96K31 380 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 HIST1H2AHQ96KK5 128 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 HIST1H2AJQ99878 128 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 CENPOQ9BU64 300 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 ANO3Q9BYT9 981 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 UPF3BQ9BZI7 483 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 EMC7Q9NPA0 242 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 HELLSQ9NRZ9 838 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 LMBRD1Q9NUN5 540 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 PLA2G3Q9NZ20 509 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 CIDEBQ9UHD4 219 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 ADAM21Q9UKJ8 722 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 MAPRE3Q9UPY8 281 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 SLC45A1Q9Y2W3 748 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 LUC7L2Q9Y383 392 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 NOC2LQ9Y3T9 749 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 TIMM22Q9Y584 194 aa3.55□□□□□ -1.84
VPS35-208ENST00000568612 BZW2Q9Y6E2 419 aaKnown RBP3.55□□□□□ -1.84
VPS35-208ENST00000568612 SYNMO15061 1565 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms