RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TRAPPC3O43617 180 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 HUS1O60921 280 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TACC1O75410 805 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 FGF18O76093 207 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 CLSTN1O94985 981 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 CYP11A1P05108 521 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 WEE2P0C1S8 567 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 FAM163BP0C2L3 166 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 P4HA1P13674 534 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TRIM21P19474 475 aaKnown RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 ACO1P21399 889 aaKnown RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 FGFR3P22607 806 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 RFX1P22670 979 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TBXAS1P24557 533 aaPredicted RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 DNAJB2P25686 324 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 CDC25BP30305 580 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 CTNNB1P35222 781 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 MFAP3P55082 362 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 CDH8P55286 799 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 POLR2FP61218 127 aaKnown RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 ERVK-21P61565 698 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 PLCB3Q01970 1234 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 ELAVL2Q12926 359 aaKnown RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 LRIT3Q3SXY7 679 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 SCARA5Q6ZMJ2 495 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 ENOSF1Q7L5Y1 443 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 DPH6Q7L8W6 267 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 SPRED2Q7Z698 418 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 DDX53Q86TM3 631 aaKnown RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 PDCL2Q8N4E4 241 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TOP6BLQ8N6T0 577 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 UBR7Q8N806 425 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 KLHL23Q8NBE8 558 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 APPL2Q8NEU8 664 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 KBTBD7Q8WVZ9 684 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 ZDHHC16Q969W1 377 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 JAKMIP2Q96AA8 810 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TMEM169Q96HH4 297 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 FAM81BQ96LP2 452 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 KREMEN1Q96MU8 473 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 SAMD11Q96NU1 681 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 TGS1Q96RS0 853 aaKnown RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 MMS19Q96T76 1030 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 PHOX2BQ99453 314 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 MRPL45Q9BRJ2 306 aaKnown RBP9.05□□□□□ -0.96
SF3B3-212ENST00000568539 NUP58Q9BVL2 599 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 PLVAPQ9BX97 442 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 NKX2-4Q9H2Z4 354 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 SMYD3Q9H7B4 428 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 CYP3A43Q9HB55 503 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 MSRAQ9UJ68 235 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 DAAM1Q9Y4D1 1078 aa9.05□□□□□ -0.96
SF3B3-212ENST00000568539 PTPRSQ13332 1948 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 A0A1W2PQJ5 194 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 ARHGEF37A1IGU5 675 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 GABRDO14764 452 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 SYN3O14994 580 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 GYPCP04921 128 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 RB1P06400 928 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 NUDT7P0C024 238 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 ODC1P11926 461 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 TYMPP19971 482 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 WARSP23381 471 aaKnown RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 TKTP29401 623 aaKnown RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 RAP1GAPP47736 663 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 KRT17Q04695 432 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 INCA1Q0VD86 236 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 TBX2Q13207 712 aaPredicted RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 C6orf132Q5T0Z8 1188 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 FAM171A1Q5VUB5 890 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 WSCD1Q658N2 575 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 PPP2R2DQ66LE6 453 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 TAS1R1Q7RTX1 841 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 TMC6Q7Z403 805 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 ADGRF2Q8IZF7 708 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 TMEM86AQ8N2M4 240 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 SPATA18Q8TC71 538 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 SHC3Q92529 594 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 BAP1Q92560 729 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 IQCDQ96DY2 449 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 C11orf84Q9BUA3 381 aaPredicted RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 HERC2P3Q9BVR0 1158 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 STK33Q9BYT3 514 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 EDEM3Q9BZQ6 932 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 GPR88Q9GZN0 384 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 FAM124BQ9H5Z6 455 aaPredicted RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 SLC28A3Q9HAS3 691 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 NLRC4Q9NPP4 1024 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 CHST7Q9NS84 486 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 CISHQ9NSE2 258 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 CEP72Q9P209 647 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 STK39Q9UEW8 545 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 DSEQ9UL01 958 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 CNTN6Q9UQ52 1028 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 STXBP5LQ9Y2K9 1186 aa9.04□□□□□ -0.96
SF3B3-212ENST00000568539 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 TIMM13Q9Y5L4 95 aaPredicted RBP9.04□□□□□ -0.96
SF3B3-212ENST00000568539 ANK1P16157 1881 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms