RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	NT5DC4	Q86YG4	428 aa		18.23	■□□□□ 0.51
CLN3-231	ENST00000568422	GPR161	Q8N6U8	529 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-231	ENST00000568422	CSGALNACT1	Q8TDX6	532 aa		18.23	■□□□□ 0.51
CLN3-231	ENST00000568422	C2orf15	Q8WU43	125 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-231	ENST00000568422	SECISBP2L	Q93073	1101 aa	Known RBP	18.23	■□□□□ 0.51
CLN3-231	ENST00000568422	EPSTI1	Q96J88	318 aa		18.23	■□□□□ 0.51
CLN3-231	ENST00000568422	F5	P12259	2224 aa		18.23	■□□□□ 0.51
CLN3-231	ENST00000568422	VPS37C	A5D8V6	355 aa	Predicted RBP	18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	ARNTL	O00327	626 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	CHAD	O15335	359 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	LILRB5	O75023	590 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	IL18RAP	O95256	599 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	GAP43	P17677	238 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	WEE1	P30291	646 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	TXLNA	P40222	546 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	FCHO2	Q0JRZ9	810 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	PTPA	Q15257	358 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	ARHGAP15	Q53QZ3	475 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	THEM5	Q8N1Q8	247 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	ZCWPW1	Q9H0M4	648 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	EPC1	Q9H2F5	836 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	DPP3	Q9NY33	737 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	OBP2A	Q9NY56	170 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	EXOC7	Q9UPT5	735 aa		18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	SRPRB	Q9Y5M8	271 aa	Known RBP	18.22	■□□□□ 0.51
CLN3-231	ENST00000568422	CYB561D2	O14569	222 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	PPP1R37	O75864	691 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	CCR3	P51677	355 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	VEPH1	Q14D04	833 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	SLC39A12	Q504Y0	691 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	RRAGB	Q5VZM2	374 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	GAREM2	Q75VX8	874 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	SV2B	Q7L1I2	683 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	DYM	Q7RTS9	669 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	SFR1	Q86XK3	245 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	ARID3B	Q8IVW6	561 aa	Predicted RBP	18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	OR10T2	Q8NGX3	314 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	POMGNT1	Q8WZA1	660 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	TMEM209	Q96SK2	561 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	PYM1	Q9BRP8	204 aa	Known RBP	18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	STRA6	Q9BX79	667 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	ATXN3L	Q9H3M9	355 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	C8orf33	Q9H7E9	229 aa	Predicted RBP	18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	MRPL44	Q9H9J2	332 aa	Known RBP	18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	LMAN1L	Q9HAT1	526 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	NCDN	Q9UBB6	729 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	ZMYM5	Q9UJ78	669 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	CLIC4	Q9Y696	253 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	DENND4C	Q5VZ89	1909 aa		18.21	■□□□□ 0.51
CLN3-231	ENST00000568422	TISP43	B9A030	160 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	DPYSL4	O14531	572 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	GABRR2	P28476	465 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	PNPLA4	P41247	253 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	KPNA1	P52294	538 aa	Predicted RBP	18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	SV2C	Q496J9	727 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	ARHGAP29	Q52LW3	1261 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	CRELD2	Q6UXH1	353 aa	Predicted RBP	18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	USP49	Q70CQ1	688 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	SPPL2B	Q8TCT7	592 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	ZNF560	Q96MR9	790 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	FBXO2	Q9UK22	296 aa	Predicted RBP	18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	MORC2	Q9Y6X9	1032 aa	Predicted RBP	18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	NCAN	O14594	1321 aa		18.2	■□□□□ 0.5
CLN3-231	ENST00000568422	CACNA1A	O00555	2505 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	KPNA7	A9QM74	516 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	LDHA	P00338	332 aa	Known RBP	18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	CHRNB1	P11230	501 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	CDC25C	P30307	473 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	ADSS	P30520	456 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	ALCAM	Q13740	583 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	LRRC32	Q14392	662 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	PUM1	Q14671	1186 aa	Known RBP eCLIP	18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	MGAT5B	Q3V5L5	792 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	GPR158	Q5T848	1215 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	TSSK4	Q6SA08	328 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	DCP1B	Q8IZD4	617 aa	Known RBP	18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	DCLK2	Q8N568	766 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	TTC9B	Q8N6N2	239 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	FAM200A	Q8TCP9	573 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	RMDN1	Q96DB5	314 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	RSPRY1	Q96DX4	576 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	GCNA	Q96QF7	691 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	ACCS	Q96QU6	501 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	SEPT5	Q99719	369 aa	Predicted RBP	18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	MKNK1	Q9BUB5	465 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	TASP1	Q9H6P5	420 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	OLFML3	Q9NRN5	406 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	PCDHB13	Q9Y5F0	798 aa		18.19	■□□□□ 0.5
CLN3-231	ENST00000568422	SOAT2	O75908	522 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	SDHB	P21912	280 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	CCNE1	P24864	410 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	PLCB2	Q00722	1185 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	TAF12	Q16514	161 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	STXBP5	Q5T5C0	1151 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	L1TD1	Q5T7N2	865 aa	Known RBP	18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	CCDC73	Q6ZRK6	1079 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	RALGPS2	Q86X27	583 aa	Predicted RBP	18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	EFCAB13	Q8IY85	973 aa		18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	CACTIN	Q8WUQ7	758 aa	Known RBP	18.18	■□□□□ 0.5
CLN3-231	ENST00000568422	DNAJC19	Q96DA6	116 aa		18.18	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms