RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CDR1P51861 262 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 PNOCQ13519 176 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 MYBPC2Q14324 1141 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 KCNB1Q14721 858 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 GET4Q7L5D6 327 aaPredicted RBP16.19■□□□□ 0.18
VPS39-210ENST00000568357 METTL23Q86XA0 190 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 WDR49Q8IV35 697 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 LRRC52Q8N7C0 313 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 ATAD1Q8NBU5 361 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 ITFG1Q8TB96 612 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 GOLGA5Q8TBA6 731 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 PLEKHO2Q8TD55 490 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 TMEM174Q8WUU8 243 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 ZNF516Q92618 1163 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 ANKRD36BP1Q96IX9 119 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 IRF2BPLQ9H1B7 796 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 KCNK12Q9HB15 430 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 CIZ1Q9ULV3 898 aaPredicted RBP16.19■□□□□ 0.18
VPS39-210ENST00000568357 SORCS3Q9UPU3 1222 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 SLC27A5Q9Y2P5 690 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 INSL5Q9Y5Q6 135 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 TCHHQ07283 1943 aa16.19■□□□□ 0.18
VPS39-210ENST00000568357 CST3P01034 146 aaPredicted RBP16.18■□□□□ 0.18
VPS39-210ENST00000568357 TNNC2P02585 160 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 LRG1P02750 347 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 PTPN2P17706 415 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 TNNI1P19237 187 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 CASP4P49662 377 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 FAM160A1Q05DH4 1040 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 BFSP1Q12934 665 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 DUSP4Q13115 394 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 PABPC1LQ4VXU2 614 aaKnown RBP16.18■□□□□ 0.18
VPS39-210ENST00000568357 CENPPQ6IPU0 288 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 POTEHQ6S545 545 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 TRAPPC11Q7Z392 1133 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 LRRTM3Q86VH5 581 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 SLC9A9Q8IVB4 645 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 PDCL2Q8N4E4 241 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 ST13P5Q8NFI4 369 aaPredicted RBP16.18■□□□□ 0.18
VPS39-210ENST00000568357 RSAD2Q8WXG1 361 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 CCDC47Q96A33 483 aaKnown RBP16.18■□□□□ 0.18
VPS39-210ENST00000568357 FNBP1Q96RU3 617 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 CGRRF1Q99675 332 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 ZCWPW1Q9H0M4 648 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 GDAP2Q9NXN4 497 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 CEP72Q9P209 647 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 L1RE1Q9UN81 338 aa16.18■□□□□ 0.18
VPS39-210ENST00000568357 MTCL1Q9Y4B5 1905 aaKnown RBP16.17■□□□□ 0.18
VPS39-210ENST00000568357 C2orf16Q68DN1 1984 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 MTMR11A4FU01 709 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 GADD45BO75293 160 aaPredicted RBP16.17■□□□□ 0.18
VPS39-210ENST00000568357 NR3C1P04150 777 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 RHOP08100 348 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 TWF1Q12792 350 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 MTMR3Q13615 1198 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 SLC5A9Q2M3M2 681 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 THEM5Q8N1Q8 247 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 ERCC4Q92889 916 aaPredicted RBP16.17■□□□□ 0.18
VPS39-210ENST00000568357 FGF13Q92913 245 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 HPDLQ96IR7 371 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 CDH7Q9ULB5 785 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 TRAF3IP3Q9Y228 551 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 SNX9Q9Y5X1 595 aa16.17■□□□□ 0.18
VPS39-210ENST00000568357 HUS1O60921 280 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 PRPF40AO75400 957 aaKnown RBP16.16■□□□□ 0.18
VPS39-210ENST00000568357 ID4P47928 161 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 MYO1EQ12965 1108 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 TDGQ13569 410 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 SOWAHAQ2M3V2 549 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 SLC39A12Q504Y0 691 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 OSTM1Q86WC4 334 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 UBALD2Q8IYN6 164 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 SMYD4Q8IYR2 804 aaPredicted RBP16.16■□□□□ 0.18
VPS39-210ENST00000568357 HS6ST3Q8IZP7 471 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 GUF1Q8N442 669 aaKnown RBP16.16■□□□□ 0.18
VPS39-210ENST00000568357 TTC9BQ8N6N2 239 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 PARD3BQ8TEW8 1205 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 TIGD1Q96MW7 591 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 CORO1BQ9BR76 489 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 AVENQ9NQS1 362 aaPredicted RBP16.16■□□□□ 0.18
VPS39-210ENST00000568357 IGSF9Q9P2J2 1179 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 MRPS23Q9Y3D9 190 aaKnown RBP16.16■□□□□ 0.18
VPS39-210ENST00000568357 DENND4AQ7Z401 1863 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 SCN1AP35498 2009 aa16.16■□□□□ 0.18
VPS39-210ENST00000568357 PTPRZ1P23471 2315 aaPredicted RBP16.16■□□□□ 0.18
VPS39-210ENST00000568357 ANHXE9PGG2 379 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 NRG2O14511 850 aaPredicted RBP16.15■□□□□ 0.18
VPS39-210ENST00000568357 GALR2O43603 387 aaPredicted RBP16.15■□□□□ 0.18
VPS39-210ENST00000568357 HCRTO43612 131 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 SOAT2O75908 522 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 KIF20AO95235 890 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 CCR2P41597 374 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 DLG4P78352 724 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 CLDN10P78369 228 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 PRSS36Q5K4E3 855 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 LIMS2Q7Z4I7 341 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 TMEM86AQ8N2M4 240 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 SLC44A3Q8N4M1 653 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 TOP6BLQ8N6T0 577 aa16.15■□□□□ 0.18
VPS39-210ENST00000568357 ING5Q8WYH8 240 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms