RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 RHOBTB3O94955 611 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 CEBPBP17676 345 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 PTPN2P17706 415 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 CCNE1P24864 410 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 GDI1P31150 447 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 NAMPTP43490 491 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 TFDP1Q14186 410 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 KCNB1Q14721 858 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 CCDC6Q16204 474 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 SLC5A9Q2M3M2 681 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 DGKKQ5KSL6 1271 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 FAM26FQ5R3K3 315 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 DAB2IPQ5VWQ8 1189 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 MAP4K3Q8IVH8 894 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 GLIS3Q8NEA6 775 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 SPATA20Q8TB22 786 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 CSGALNACT1Q8TDX6 532 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 GSDMAQ96QA5 445 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 FGFBP2Q9BYJ0 223 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 GZF1Q9H116 711 aaPredicted RBP12.3□□□□□ -0.44
CLN3-226ENST00000567160 C17orf75Q9HAS0 396 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 SLC39A2Q9NP94 309 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 SEL1LQ9UBV2 794 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 GDAQ9Y2T3 454 aa12.3□□□□□ -0.44
CLN3-226ENST00000567160 TSPAN1O60635 241 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 RPP40O75818 363 aaKnown RBP12.29□□□□□ -0.44
CLN3-226ENST00000567160 MICAL2O94851 1124 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 GCNT3O95395 438 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 LRG1P02750 347 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 CCDC192P0DO97 292 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 FCARP24071 287 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 OR1D2P34982 312 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 RAP1GAPP47736 663 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 CASP5P51878 434 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 SMTNP53814 917 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 NCKAP1LP55160 1127 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 EHHADHQ08426 723 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 STK4Q13043 487 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 TUSC3Q13454 348 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 GAS6Q14393 721 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 ZC2HC1CQ53FD0 456 aaPredicted RBP12.29□□□□□ -0.44
CLN3-226ENST00000567160 FAM78AQ5JUQ0 283 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 PLA2G2CQ5R387 149 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 NT5DC1Q5TFE4 455 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 RBM43Q6ZSC3 357 aaKnown RBP12.29□□□□□ -0.44
CLN3-226ENST00000567160 HAUS6Q7Z4H7 955 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 ZBTB8OSQ8IWT0 167 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 SMYD4Q8IYR2 804 aaPredicted RBP12.29□□□□□ -0.44
CLN3-226ENST00000567160 FAM200AQ8TCP9 573 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 HASPINQ8TF76 798 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 SPIRE2Q8WWL2 714 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 GAB3Q8WWW8 586 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 RABGGTAQ92696 567 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 GATA6Q92908 595 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 TMEM121BQ9BXQ6 578 aaPredicted RBP12.29□□□□□ -0.44
CLN3-226ENST00000567160 NXF3Q9H4D5 531 aaKnown RBP12.29□□□□□ -0.44
CLN3-226ENST00000567160 GCN1Q92616 2671 aaKnown RBP12.29□□□□□ -0.44
CLN3-226ENST00000567160 VWA8A3KMH1 1905 aa12.29□□□□□ -0.44
CLN3-226ENST00000567160 SYCE3A1L190 88 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 TAF4O00268 1085 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 ADAM12O43184 909 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 KIF4AO95239 1232 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 AKAP5P24588 427 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 ELF1P32519 619 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 MPLP40238 635 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 PSMD2Q13200 908 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 MORC3Q14149 939 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 ZSCAN23Q3MJ62 389 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 ZNF658Q5TYW1 1059 aaPredicted RBP12.28□□□□□ -0.44
CLN3-226ENST00000567160 SASS6Q6UVJ0 657 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 VITQ6UXI7 678 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.28□□□□□ -0.44
CLN3-226ENST00000567160 KIAA0895Q8NCT3 520 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 TMEM161BQ8NDZ6 487 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 GSTCDQ8NEC7 633 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 SMARCD2Q92925 531 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 CPB2Q96IY4 423 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 ASB16Q96NS5 453 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 FIZ1Q96SL8 496 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 EDEM2Q9BV94 578 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 C2orf40Q9H1Z8 148 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 C8orf33Q9H7E9 229 aaPredicted RBP12.28□□□□□ -0.44
CLN3-226ENST00000567160 OLFML3Q9NRN5 406 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 PARP2Q9UGN5 583 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 WASF3Q9UPY6 502 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 MAPK8IP1Q9UQF2 711 aa12.28□□□□□ -0.44
CLN3-226ENST00000567160 DSPP15924 2871 aaKnown RBP12.28□□□□□ -0.44
CLN3-226ENST00000567160 TRIP11Q15643 1979 aa12.27□□□□□ -0.44
CLN3-226ENST00000567160 CITO14578 2027 aa12.27□□□□□ -0.44
CLN3-226ENST00000567160 CCDC163A0A0D9SF12 145 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 INO80B-WBP1J3KQ70 363 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 K7ERI5 159 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 AKAP3O75969 853 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 PRPF6O94906 941 aaKnown RBP12.27□□□□□ -0.45
CLN3-226ENST00000567160 MAPTP10636 758 aaKnown RBP12.27□□□□□ -0.45
CLN3-226ENST00000567160 SPINK2P20155 84 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 BMP6P22004 513 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 KPNA1P52294 538 aaPredicted RBP12.27□□□□□ -0.45
CLN3-226ENST00000567160 PTENP60484 403 aa12.27□□□□□ -0.45
CLN3-226ENST00000567160 L1TD1Q5T7N2 865 aaKnown RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms