RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 FBXL21Q9UKT6 434 aa19.81■□□□□ 0.76
CLN3-221ENST00000566057 MOSPD3O75425 235 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 SOAT2O75908 522 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 KRT19P08727 400 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 TMEM191BP0C7N4 346 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 SRFP11831 508 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 NPR3P17342 541 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 SNRPFP62306 86 aaKnown RBP19.8■□□□□ 0.76
CLN3-221ENST00000566057 RBP5P82980 135 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 BFSP1Q12934 665 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 SNRNP35Q16560 246 aaKnown RBP19.8■□□□□ 0.76
CLN3-221ENST00000566057 KNOP1Q1ED39 458 aaKnown RBP19.8■□□□□ 0.76
CLN3-221ENST00000566057 SLC39A12Q504Y0 691 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 SIX5Q8N196 739 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 THEM5Q8N1Q8 247 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 ELMOD1Q8N336 334 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 PDCL2Q8N4E4 241 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 LRRC52Q8N7C0 313 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 FSIP1Q8NA03 581 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 DNAJC25Q9H1X3 360 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 KCNH6Q9H252 994 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 L1RE1Q9UN81 338 aa19.8■□□□□ 0.76
CLN3-221ENST00000566057 DENND4CQ5VZ89 1909 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 A0A1W2PQ27 194 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 A0A1W2PQ64 194 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 A0A1W2PQD8 194 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 KRBA1A5PL33 1030 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 PRR29P0C7W0 189 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 EPHA5P54756 1037 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 DUOXA2Q1HG44 320 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 IQCEQ6IPM2 695 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 MTSS1LQ765P7 747 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 PDZD4Q76G19 769 aaPredicted RBP19.79■□□□□ 0.76
CLN3-221ENST00000566057 HS2ST1Q7LGA3 356 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 TMEM105Q8N8V8 129 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 XXYLT1Q8NBI6 393 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 PRSS33Q8NF86 280 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 GPR152Q8TDT2 470 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 ANKRD36BP1Q96IX9 119 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 KXD1Q9BQD3 176 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 LRRC3Q9BY71 257 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 EXOC1Q9NV70 894 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 GDAP2Q9NXN4 497 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 GDE1Q9NZC3 331 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 WNT16Q9UBV4 365 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 PIEZO1Q92508 2521 aa19.79■□□□□ 0.76
CLN3-221ENST00000566057 ZNF197O14709 1029 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 MYL4P12829 197 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 GJA1P17302 382 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 GPC5P78333 572 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 CYP24A1Q07973 514 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 PSMD2Q13200 908 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 SURF1Q15526 300 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 CYP4A22Q5TCH4 519 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 ASTLQ6HA08 431 aaPredicted RBP19.78■□□□□ 0.76
CLN3-221ENST00000566057 C12orf56Q8IXR9 622 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 FLCNQ8NFG4 579 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 ZSWIM3Q96MP5 696 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 PLA2G2FQ9BZM2 168 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 GZF1Q9H116 711 aaPredicted RBP19.78■□□□□ 0.76
CLN3-221ENST00000566057 MFSD1Q9H3U5 465 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 SLC2A4RGQ9NR83 387 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 CA14Q9ULX7 337 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 SNX9Q9Y5X1 595 aa19.78■□□□□ 0.76
CLN3-221ENST00000566057 HUS1O60921 280 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 MICAL2O94851 1124 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 TNNC2P02585 160 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 MYL1P05976 194 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 DLATP10515 647 aaKnown RBP19.77■□□□□ 0.76
CLN3-221ENST00000566057 ALDH1A3P47895 512 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 EPHB3P54753 998 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 PSMD6Q15008 389 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 CWF19L1Q69YN2 538 aaKnown RBP19.77■□□□□ 0.76
CLN3-221ENST00000566057 TANGO2Q6ICL3 276 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 TMC8Q8IU68 726 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 WDR49Q8IV35 697 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 ZNF516Q92618 1163 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 CCDC127Q96BQ5 260 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 HPDLQ96IR7 371 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 KCTD10Q9H3F6 313 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 ASAH2Q9NR71 780 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 TMLHEQ9NVH6 421 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 CGNQ9P2M7 1197 aaKnown RBP19.77■□□□□ 0.76
CLN3-221ENST00000566057 HSFX1Q9UBD0 423 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 COL4A3Q01955 1670 aa19.77■□□□□ 0.76
CLN3-221ENST00000566057 PI15O43692 258 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 ZNF202O95125 648 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 CST3P01034 146 aaPredicted RBP19.76■□□□□ 0.75
CLN3-221ENST00000566057 RPN1P04843 607 aaKnown RBP19.76■□□□□ 0.75
CLN3-221ENST00000566057 CLCN5P51795 746 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 TCF15Q12870 199 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 PLD1Q13393 1074 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 SOWAHAQ2M3V2 549 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 FAM78AQ5JUQ0 283 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 KRBA2Q6ZNG9 492 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 TRAPPC11Q7Z392 1133 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 DNAJB7Q7Z6W7 309 aaPredicted RBP19.76■□□□□ 0.75
CLN3-221ENST00000566057 OSTM1Q86WC4 334 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 SHKBP1Q8TBC3 707 aa19.76■□□□□ 0.75
CLN3-221ENST00000566057 PLEKHO2Q8TD55 490 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms