RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SERTAD1Q9UHV2 236 aa22.35■■□□□ 1.17
CLN3-219ENST00000565778 PVALEFA0A1B0GWK0 134 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 TUFMP49411 452 aaKnown RBP22.34■■□□□ 1.17
CLN3-219ENST00000565778 RBP5P82980 135 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 SNW1Q13573 536 aaKnown RBP22.34■■□□□ 1.17
CLN3-219ENST00000565778 CUL4BQ13620 913 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 SURF1Q15526 300 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 SLC44A4Q53GD3 710 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 SHDQ96IW2 340 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 ANKRD36BP1Q96IX9 119 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 SPATA32Q96LK8 384 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 PHOX2BQ99453 314 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 PLA2G2FQ9BZM2 168 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 ZFP14Q9HCL3 533 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 SLC39A2Q9NP94 309 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 FAM86C1Q9NVL1 165 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 ITGA11Q9UKX5 1188 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 NOTCH4Q99466 2003 aa22.34■■□□□ 1.17
CLN3-219ENST00000565778 KMT2EQ8IZD2 1858 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 CLIC2O15247 247 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 HUS1O60921 280 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 SOAT2O75908 522 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 SLFN14P0C7P3 912 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 EPHA5P54756 1037 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 PFKPQ01813 784 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 BFSP1Q12934 665 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 MGAT5BQ3V5L5 792 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 FAM78AQ5JUQ0 283 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 LMBRD2Q68DH5 695 aaPredicted RBP22.33■■□□□ 1.17
CLN3-219ENST00000565778 PHLDB3Q6NSJ2 640 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 DNAJB7Q7Z6W7 309 aaPredicted RBP22.33■■□□□ 1.17
CLN3-219ENST00000565778 CBWD2Q8IUF1 395 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 GRAMD1CQ8IYS0 662 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 DCP1BQ8IZD4 617 aaKnown RBP22.33■■□□□ 1.17
CLN3-219ENST00000565778 TTC9BQ8N6N2 239 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 LRRC52Q8N7C0 313 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 FAM200AQ8TCP9 573 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 ELSPBP1Q96BH3 223 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 FAM84AQ96KN4 292 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 ZSWIM3Q96MP5 696 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 SEPT5Q99719 369 aaPredicted RBP22.33■■□□□ 1.17
CLN3-219ENST00000565778 MTMR12Q9C0I1 747 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 DNAJC25Q9H1X3 360 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 HSFX1Q9UBD0 423 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 ZDHHC9Q9Y397 364 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 SIT1Q9Y3P8 196 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 ASB3Q9Y575 518 aa22.33■■□□□ 1.17
CLN3-219ENST00000565778 A0A1B0GVL5 298 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 NRG2O14511 850 aaPredicted RBP22.32■■□□□ 1.16
CLN3-219ENST00000565778 TGFB1I1O43294 461 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 MOSPD3O75425 235 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 TNNC2P02585 160 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 CMA1P23946 247 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 KRT85P78386 507 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 SMARCB1Q12824 385 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 TEAD2Q15562 447 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 DUOXA2Q1HG44 320 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 SCARA3Q6AZY7 606 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 LRRTM3Q86VH5 581 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 DTWD2Q8NBA8 298 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 LEO1Q8WVC0 666 aaPredicted RBP22.32■■□□□ 1.16
CLN3-219ENST00000565778 SCFD1Q8WVM8 642 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 ASB16Q96NS5 453 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 SLITRK6Q9H5Y7 841 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 AGPAT3Q9NRZ7 376 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 INTS13Q9NVM9 706 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 ANK1P16157 1881 aa22.32■■□□□ 1.16
CLN3-219ENST00000565778 A0A1W2PRU2 124 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 STARD6P59095 220 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 SNRPFP62306 86 aaKnown RBP22.31■■□□□ 1.16
CLN3-219ENST00000565778 EHHADHQ08426 723 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 HS2ST1Q7LGA3 356 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 ITIH5Q86UX2 942 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 PDCL2Q8N4E4 241 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 OR5B17Q8NGF7 314 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 SHKBP1Q8TBC3 707 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 C2orf15Q8WU43 125 aaKnown RBP22.31■■□□□ 1.16
CLN3-219ENST00000565778 PSMG2Q969U7 264 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 PAGE5Q96GU1 130 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 CHAMP1Q96JM3 812 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 LRRC3Q9BY71 257 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 GPR88Q9GZN0 384 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 SNX9Q9Y5X1 595 aa22.31■■□□□ 1.16
CLN3-219ENST00000565778 SCN1AP35498 2009 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 DCNP07585 359 aaKnown RBP22.3■■□□□ 1.16
CLN3-219ENST00000565778 CYP2J2P51589 502 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 TSPY1Q01534 308 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 MYO1EQ12965 1108 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 VEPH1Q14D04 833 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 MLF2Q15773 248 aaPredicted RBP22.3■■□□□ 1.16
CLN3-219ENST00000565778 TAF12Q16514 161 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 CCDC105Q8IYK2 499 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 XXYLT1Q8NBI6 393 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 CXorf38Q8TB03 319 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 ZSCAN18Q8TBC5 510 aaPredicted RBP22.3■■□□□ 1.16
CLN3-219ENST00000565778 SPPL2BQ8TCT7 592 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 SMARCD2Q92925 531 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 GDAP2Q9NXN4 497 aa22.3■■□□□ 1.16
CLN3-219ENST00000565778 ABI2Q9NYB9 513 aaPredicted RBP22.3■■□□□ 1.16
CLN3-219ENST00000565778 SIX4Q9UIU6 781 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms