RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 TKTP29401 623 aaKnown RBP22.05■■□□□ 1.12
CLN3-212ENST00000564574 RAP1GAPP47736 663 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 YWHAHQ04917 246 aaPredicted RBP22.05■■□□□ 1.12
CLN3-212ENST00000564574 OVOS1Q6IE37 1185 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 TMC6Q7Z403 805 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 UNC93AQ86WB7 457 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 THEM5Q8N1Q8 247 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 KBTBD7Q8WVZ9 684 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 ANP32BQ92688 251 aaKnown RBP22.05■■□□□ 1.12
CLN3-212ENST00000564574 KAT5Q92993 513 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 ARID3AQ99856 593 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 CISHQ9NSE2 258 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 MYO6Q9UM54 1294 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 BARX2Q9UMQ3 279 aaPredicted RBP22.05■■□□□ 1.12
CLN3-212ENST00000564574 SSX2IPQ9Y2D8 614 aa22.05■■□□□ 1.12
CLN3-212ENST00000564574 TMEM265A0A087WTH1 108 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 H3BNC9 293 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 H7C4K7 107 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 OAZ2O95190 189 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 ACO1P21399 889 aaKnown RBP22.04■■□□□ 1.12
CLN3-212ENST00000564574 GLUD2P49448 558 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 CDH8P55286 799 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 RAPGEF1Q13905 1077 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 MRPL58Q14197 206 aaKnown RBP22.04■■□□□ 1.12
CLN3-212ENST00000564574 BMS1Q14692 1282 aaKnown RBP22.04■■□□□ 1.12
CLN3-212ENST00000564574 ARHGAP44Q17R89 818 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 KIAA1841Q6NSI8 718 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 ANKS3Q6ZW76 656 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 PPFIBP1Q86W92 1011 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 CEP57Q86XR8 500 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 FMNL3Q8IVF7 1028 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 OR6B3Q8NGW1 331 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 SPPL3Q8TCT6 385 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 PIK3R5Q8WYR1 880 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 SHC3Q92529 594 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 SPAG5Q96R06 1193 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 MRPL45Q9BRJ2 306 aaKnown RBP22.04■■□□□ 1.12
CLN3-212ENST00000564574 NLRC4Q9NPP4 1024 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 AJAP1Q9UKB5 411 aaPredicted RBP22.04■■□□□ 1.12
CLN3-212ENST00000564574 MTUS1Q9ULD2 1270 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 CNTN6Q9UQ52 1028 aa22.04■■□□□ 1.12
CLN3-212ENST00000564574 TIMM13Q9Y5L4 95 aaPredicted RBP22.04■■□□□ 1.12
CLN3-212ENST00000564574 CILPO75339 1184 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 URODP06132 367 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 CD58P19256 250 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 GNL1P36915 607 aaPredicted RBP22.03■■□□□ 1.12
CLN3-212ENST00000564574 JAM2P57087 298 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 DSG1Q02413 1049 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 GPM6BQ13491 265 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 DRAP1Q14919 205 aaPredicted RBP22.03■■□□□ 1.12
CLN3-212ENST00000564574 VARS2Q5ST30 1063 aaKnown RBP22.03■■□□□ 1.12
CLN3-212ENST00000564574 ZNF280DQ6N043 979 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 TAS1R1Q7RTX1 841 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 SPRED2Q7Z698 418 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 VPS52Q8N1B4 723 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 ZNF397Q8NF99 534 aaPredicted RBP22.03■■□□□ 1.12
CLN3-212ENST00000564574 ZBP1Q9H171 429 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 NUCKS1Q9H1E3 243 aaKnown RBP22.03■■□□□ 1.12
CLN3-212ENST00000564574 CAPN11Q9UMQ6 739 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 PCDHB4Q9Y5E5 795 aa22.03■■□□□ 1.12
CLN3-212ENST00000564574 GYPCP04921 128 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 CTSAP10619 480 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 PCSK1P29120 753 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 STAT1P42224 750 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 CREMQ03060 361 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 TBX2Q13207 712 aaPredicted RBP22.02■■□□□ 1.12
CLN3-212ENST00000564574 RTP2Q5QGT7 225 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 KIAA0319Q5VV43 1072 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 OSTM1Q86WC4 334 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 DRC7Q8IY82 874 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 POF1BQ8WVV4 589 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 BAP1Q92560 729 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 ACBD6Q9BR61 282 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 LMAN2LQ9H0V9 348 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 ALG13Q9NP73 1137 aaKnown RBP22.02■■□□□ 1.12
CLN3-212ENST00000564574 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22.02■■□□□ 1.12
CLN3-212ENST00000564574 DDX43Q9NXZ2 648 aaKnown RBP22.02■■□□□ 1.12
CLN3-212ENST00000564574 STXBP5LQ9Y2K9 1186 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 LUC7L2Q9Y383 392 aaKnown RBP22.02■■□□□ 1.12
CLN3-212ENST00000564574 BACE2Q9Y5Z0 518 aa22.02■■□□□ 1.12
CLN3-212ENST00000564574 COL4A4P53420 1690 aaPredicted RBP22.01■■□□□ 1.11
CLN3-212ENST00000564574 A8MXQ7 604 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 F8VZ95 297 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 NDST1P52848 882 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 ZBED6P86452 979 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 PDE12Q6L8Q7 609 aaKnown RBP22.01■■□□□ 1.11
CLN3-212ENST00000564574 TMEM270Q6UE05 265 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 LNX1Q8TBB1 728 aaPredicted RBP22.01■■□□□ 1.11
CLN3-212ENST00000564574 ARNTL2Q8WYA1 636 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 RIN2Q8WYP3 895 aaPredicted RBP22.01■■□□□ 1.11
CLN3-212ENST00000564574 TNIP3Q96KP6 325 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 NT5C1AQ9BXI3 368 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 GPR88Q9GZN0 384 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 TLR9Q9NR96 1032 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 MRPL17Q9NRX2 175 aaKnown RBP22.01■■□□□ 1.11
CLN3-212ENST00000564574 IMPACTQ9P2X3 320 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 MTRRQ9UBK8 725 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 CDH9Q9ULB4 789 aa22.01■■□□□ 1.11
CLN3-212ENST00000564574 OR6C75A6NL08 312 aa22■■□□□ 1.11
CLN3-212ENST00000564574 GOLGA6L6A8MZA4 724 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms