RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 LARP1BQ659C4 914 aaKnown RBP18.26■□□□□ 0.51
CLN3-211ENST00000564091 ADALQ6DHV7 355 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 TXNDC11Q6PKC3 985 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 GPR161Q8N6U8 529 aaKnown RBP18.26■□□□□ 0.51
CLN3-211ENST00000564091 FAM200AQ8TCP9 573 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 SEPT5Q99719 369 aaPredicted RBP18.26■□□□□ 0.51
CLN3-211ENST00000564091 IER2Q9BTL4 223 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 PARD6AQ9NPB6 346 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 GTSE1Q9NYZ3 720 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 USP18Q9UMW8 372 aa18.26■□□□□ 0.51
CLN3-211ENST00000564091 ANO9A1A5B4 782 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 DPYSL4O14531 572 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 LONP1P36776 959 aaKnown RBP18.25■□□□□ 0.51
CLN3-211ENST00000564091 ATXN1P54253 815 aaKnown RBP18.25■□□□□ 0.51
CLN3-211ENST00000564091 NRLP54845 237 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 MLLT6P55198 1093 aaPredicted RBP18.25■□□□□ 0.51
CLN3-211ENST00000564091 CYP4F8P98187 520 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 DMWDQ09019 674 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 PPP2R5DQ14738 602 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 SF3A1Q15459 793 aaKnown RBP18.25■□□□□ 0.51
CLN3-211ENST00000564091 MGAT5BQ3V5L5 792 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 Q6ZS52 159 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 ITIH5Q86UX2 942 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 GIPC2Q8TF65 315 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 ZCWPW1Q9H0M4 648 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 C8orf33Q9H7E9 229 aaPredicted RBP18.25■□□□□ 0.51
CLN3-211ENST00000564091 GMEB2Q9UKD1 530 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 DERAQ9Y315 318 aa18.25■□□□□ 0.51
CLN3-211ENST00000564091 CHURC1-FNTBB4DL54 471 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 SPECC1L-ADORA2AF8WAN1 911 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 CYB561D2O14569 222 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 PRAMEF12O95522 483 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 CYP11A1P05108 521 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 ATF6P18850 670 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 PAX3P23760 479 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 HOXC13P31276 330 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 FNTBP49356 437 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 TUFMP49411 452 aaKnown RBP18.24■□□□□ 0.51
CLN3-211ENST00000564091 ARHGAP15Q53QZ3 475 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 PRR23BQ6ZRT6 265 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 LRRTM3Q86VH5 581 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 SPEM1Q8N4L4 309 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 CELF5Q8N6W0 485 aaKnown RBP18.24■□□□□ 0.51
CLN3-211ENST00000564091 LARP4BQ92615 738 aaKnown RBP18.24■□□□□ 0.51
CLN3-211ENST00000564091 PYM1Q9BRP8 204 aaKnown RBP18.24■□□□□ 0.51
CLN3-211ENST00000564091 SMG9Q9H0W8 520 aaKnown RBP18.24■□□□□ 0.51
CLN3-211ENST00000564091 ASB7Q9H672 318 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 IL21Q9HBE4 155 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 C2orf42Q9NWW7 574 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 DPP3Q9NY33 737 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 AGO2Q9UKV8 859 aaKnown RBP18.24■□□□□ 0.51
CLN3-211ENST00000564091 RAB23Q9ULC3 237 aa18.24■□□□□ 0.51
CLN3-211ENST00000564091 MYBPHLA2RUH7 354 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 TULP1O00294 542 aaPredicted RBP18.23■□□□□ 0.51
CLN3-211ENST00000564091 HRO43593 1189 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 BMP15O95972 392 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 CTHP32929 405 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 DDIT3P35638 169 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 LMNB2Q03252 620 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 TNK2Q07912 1038 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 SPEM2Q0P670 501 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 SRSF5Q13243 272 aaKnown RBP18.23■□□□□ 0.51
CLN3-211ENST00000564091 LRRC32Q14392 662 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 ARHGAP29Q52LW3 1261 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 WSCD1Q658N2 575 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 USP49Q70CQ1 688 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 DYMQ7RTS9 669 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 METTL23Q86XA0 190 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 MSANTD3Q96H12 275 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 EPSTI1Q96J88 318 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 TASP1Q9H6P5 420 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 HSFX1Q9UBD0 423 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 DSEQ9UL01 958 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 C2CD2Q9Y426 696 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 STYXL1Q9Y6J8 313 aa18.23■□□□□ 0.51
CLN3-211ENST00000564091 PRR5-ARHGAP8B1AHC4 643 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 FGF19O95750 216 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 ADSSP30520 456 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 TAF6P49848 677 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 ARHGAP8P85298 464 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 VEPH1Q14D04 833 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 PON2Q15165 354 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 TAF12Q16514 161 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 HEATR6Q6AI08 1181 aaKnown RBP18.22■□□□□ 0.51
CLN3-211ENST00000564091 SLFN12LQ6IEE8 588 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 C1orf228Q6PIY5 440 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 CRELD2Q6UXH1 353 aaPredicted RBP18.22■□□□□ 0.51
CLN3-211ENST00000564091 ZNF720Q7Z2F6 126 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 RALGPS2Q86X27 583 aaPredicted RBP18.22■□□□□ 0.51
CLN3-211ENST00000564091 SFR1Q86XK3 245 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 EFCAB13Q8IY85 973 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 THEM5Q8N1Q8 247 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 KRI1Q8N9T8 703 aaKnown RBP18.22■□□□□ 0.51
CLN3-211ENST00000564091 BPIFB1Q8TDL5 484 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 SLC46A2Q9BY10 475 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 OBP2AQ9NY56 170 aa18.22■□□□□ 0.51
CLN3-211ENST00000564091 MIA3Q5JRA6 1907 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 DCDC2BA2VCK2 349 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 K7ESF4 209 aa18.21■□□□□ 0.51
CLN3-211ENST00000564091 HAPLN1P10915 354 aaPredicted RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms