RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PTP4A2Q12974 167 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 PDK4Q16654 411 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 ZBTB41Q5SVQ8 909 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 OTOAQ7RTW8 1153 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 ABRAQ8N0Z2 381 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 RNPEPL1Q9HAU8 725 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 MRPL47Q9HD33 250 aaKnown RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 SGK1O00141 431 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 VNN1O95497 513 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 ACO1P21399 889 aaKnown RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 ADRA1DP25100 572 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 ALDH3A1P30838 453 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 NAIF1Q69YI7 327 aaPredicted RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 CAPRIN2Q6IMN6 1127 aaKnown RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 NLRX1Q86UT6 975 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 RIBC1Q8N443 379 aaPredicted RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 C10orf82Q8WW14 230 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 FAM151AQ8WW52 585 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 NAF1Q96HR8 494 aaKnown RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 ZBTB45Q96K62 511 aaPredicted RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 SLITRK1Q96PX8 696 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 TIPINQ9BVW5 301 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 CCDC189A1A4V9 331 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 MAGEB2O15479 319 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 SSTR1P30872 391 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 LIG4P49917 911 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 WDR72Q3MJ13 1102 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 PLEKHG4Q58EX7 1191 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 MEX3CQ5U5Q3 659 aaKnown RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 C15orf39Q6ZRI6 1047 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 NIPA1Q7RTP0 329 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 MTDHQ86UE4 582 aaKnown RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 ZNF677Q86XU0 584 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 RBBP8NLQ8NC74 664 aaPredicted RBP13.94□□□□□ -0.18
CLN3-210ENST00000563874 FEZF2Q8TBJ5 459 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 MCEEQ96PE7 176 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 ANKEF1Q9NU02 776 aa13.94□□□□□ -0.18
CLN3-210ENST00000563874 UTRNP46939 3433 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 PRPF4O43172 522 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLN3-210ENST00000563874 SMNDC1O75940 238 aaKnown RBP eCLIP13.93□□□□□ -0.18
CLN3-210ENST00000563874 HARSP12081 509 aaKnown RBP13.93□□□□□ -0.18
CLN3-210ENST00000563874 JAK3P52333 1124 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 BPIFB4P59827 614 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 CUL2Q13617 745 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 DLGAP5Q15398 846 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 MAPK6Q16659 721 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 ZACNQ401N2 412 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 ZNF394Q53GI3 561 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 ZNF772Q68DY9 489 aaPredicted RBP13.93□□□□□ -0.18
CLN3-210ENST00000563874 PLEKHA7Q6IQ23 1121 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 SWSAP1Q6NVH7 229 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 SUPT20HQ8NEM7 779 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 ZNF75CPQ92670 426 aaPredicted RBP13.93□□□□□ -0.18
CLN3-210ENST00000563874 SENP7Q9BQF6 1050 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 CNTNAP1P78357 1384 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 LRRD1A4D1F6 860 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 DCTN3O75935 186 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 CALB2P22676 271 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 CETN2P41208 172 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 SESN3P58005 492 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 NR1H3Q13133 447 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 TFDP1Q14186 410 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 PARP6Q2NL67 630 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 EAPPQ56P03 285 aaPredicted RBP13.93□□□□□ -0.18
CLN3-210ENST00000563874 ARHGEF16Q5VV41 709 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 NLRP9Q7RTR0 991 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 MCF2L2Q86YR7 1114 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 CCDC125Q86Z20 511 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 AGGF1Q8N302 714 aaeCLIP13.93□□□□□ -0.18
CLN3-210ENST00000563874 ALLCQ8N6M5 410 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 PDCD2LQ9BRP1 358 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 XPNPEP1Q9NQW7 623 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 ANKFY1Q9P2R3 1169 aa13.93□□□□□ -0.18
CLN3-210ENST00000563874 SEPT9Q9UHD8 586 aaPredicted RBP13.93□□□□□ -0.18
CLN3-210ENST00000563874 ZNF541Q9H0D2 1346 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 TYROBPO43914 113 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 ZC3H11AO75152 810 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLN3-210ENST00000563874 TJP3O95049 919 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 PDHA1P08559 390 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 POTEJP0CG39 1038 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 TPBGLP0DKB5 382 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 GNAZP19086 355 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 GPX6P59796 221 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 ZNF252P-AS1Q0IIN9 211 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 STK32AQ8WU08 396 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 SPIRE2Q8WWL2 714 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 NTPCRQ9BSD7 190 aaKnown RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 DENND2DQ9H6A0 471 aaPredicted RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 CYP39A1Q9NYL5 469 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 ZFP69BQ9UJL9 534 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 SMG5Q9UPR3 1016 aaKnown RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 NUB1Q9Y5A7 615 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 PCDHA10Q9Y5I2 948 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 COL11A2P13942 1736 aaPredicted RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 H0YIN7 160 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 PLA2G6O60733 806 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 C4BPAP04003 597 aaKnown RBP13.92□□□□□ -0.18
CLN3-210ENST00000563874 KRT76Q01546 638 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 OGDHQ02218 1023 aa13.92□□□□□ -0.18
CLN3-210ENST00000563874 LMNB2Q03252 620 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms