RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 ADAM33Q9BZ11 813 aa11.33□□□□□ -0.6
SF3B3-204ENST00000563739 SLITRK6Q9H5Y7 841 aa11.33□□□□□ -0.6
SF3B3-204ENST00000563739 ORC3Q9UBD5 711 aaPredicted RBP11.33□□□□□ -0.6
SF3B3-204ENST00000563739 MAFFQ9ULX9 164 aa11.33□□□□□ -0.6
SF3B3-204ENST00000563739 CYP46A1Q9Y6A2 500 aa11.33□□□□□ -0.6
SF3B3-204ENST00000563739 TCHHQ07283 1943 aa11.33□□□□□ -0.6
SF3B3-204ENST00000563739 BCLAF3A2AJT9 711 aaKnown RBP11.32□□□□□ -0.6
SF3B3-204ENST00000563739 ARHGEF35A5YM69 484 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 C4orf47A7E2U8 309 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 PATE3B3GLJ2 98 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 TAF4O00268 1085 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 JAK2O60674 1132 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 RNF40O75150 1001 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 MCF2P10911 925 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 ARSAP15289 507 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 RPL9P32969 192 aaKnown RBP11.32□□□□□ -0.6
SF3B3-204ENST00000563739 MCM4P33991 863 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 CDR1P51861 262 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 EFNA5P52803 228 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 SPAG1Q07617 926 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 FOXC1Q12948 553 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 GPR17Q13304 367 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 TMEM132AQ24JP5 1023 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 GPR158Q5T848 1215 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 RNF43Q68DV7 783 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 C1orf228Q6PIY5 440 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 CENPQQ7L2Z9 268 aaPredicted RBP11.32□□□□□ -0.6
SF3B3-204ENST00000563739 KCNK18Q7Z418 384 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 C4orf32Q8N8J7 132 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 NSUN7Q8NE18 718 aaKnown RBP11.32□□□□□ -0.6
SF3B3-204ENST00000563739 E2F7Q96AV8 911 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 CCDC94Q9BW85 323 aaPredicted RBP11.32□□□□□ -0.6
SF3B3-204ENST00000563739 SLC46A2Q9BY10 475 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 GPR88Q9GZN0 384 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 VPS45Q9NRW7 570 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 SLC38A7Q9NVC3 462 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 SLC27A5Q9Y2P5 690 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 PI4KAP42356 2102 aa11.32□□□□□ -0.6
SF3B3-204ENST00000563739 PLXNB3Q9ULL4 1909 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 HELZ2Q9BYK8 2649 aaKnown RBP11.31□□□□□ -0.6
SF3B3-204ENST00000563739 TRDMT1O14717 391 aaKnown RBP11.31□□□□□ -0.6
SF3B3-204ENST00000563739 TADA3O75528 432 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 CXCL8P10145 99 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 HNRNPLP14866 589 aaKnown RBP eCLIP11.31□□□□□ -0.6
SF3B3-204ENST00000563739 BCKDHBP21953 392 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 U2AF2P26368 475 aaKnown RBP eCLIP11.31□□□□□ -0.6
SF3B3-204ENST00000563739 GABRR2P28476 465 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 MCM2P49736 904 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 FOSBP53539 338 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 RING1Q06587 406 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 PPP2R5AQ15172 486 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 ITPRIPL2Q3MIP1 535 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 SH3PXD2AQ5TCZ1 1133 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 ERICH6BQ5W0A0 696 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 MPZL3Q6UWV2 235 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 DNAJB7Q7Z6W7 309 aaPredicted RBP11.31□□□□□ -0.6
SF3B3-204ENST00000563739 ELMOD1Q8N336 334 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 NECAB1Q8N987 351 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 STKLD1Q8NE28 680 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 BPIFB1Q8TDL5 484 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 RUSC1Q9BVN2 902 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 SCNM1Q9BWG6 230 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 BHMT2Q9H2M3 363 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 TMEM134Q9H6X4 195 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 TOPORSQ9NS56 1045 aaPredicted RBP11.31□□□□□ -0.6
SF3B3-204ENST00000563739 PDRG1Q9NUG6 133 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 TBX20Q9UMR3 447 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 NUB1Q9Y5A7 615 aa11.31□□□□□ -0.6
SF3B3-204ENST00000563739 TTC26A0AVF1 554 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 CDKL5O76039 1030 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 HARSP12081 509 aaKnown RBP11.3□□□□□ -0.6
SF3B3-204ENST00000563739 TNFSF9P41273 254 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 PEX3P56589 373 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 GAB4Q2WGN9 574 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 PMS2CLQ68D20 193 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 CPLX2Q6PUV4 134 aaKnown RBP11.3□□□□□ -0.6
SF3B3-204ENST00000563739 YAF2Q8IY57 180 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 APPL2Q8NEU8 664 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 KIFAP3Q92845 792 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 USP13Q92995 863 aaPredicted RBP11.3□□□□□ -0.6
SF3B3-204ENST00000563739 TASP1Q9H6P5 420 aa11.3□□□□□ -0.6
SF3B3-204ENST00000563739 CEP192Q8TEP8 1941 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 E9PMD0 336 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 K7ERI5 159 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 HIP1RO75146 1068 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 CCDC192P0DO97 292 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 HMGA1P17096 107 aaKnown RBP11.29□□□□□ -0.6
SF3B3-204ENST00000563739 NMT1P30419 496 aaKnown RBP11.29□□□□□ -0.6
SF3B3-204ENST00000563739 MCM7P33993 719 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 YARSP54577 528 aaKnown RBP11.29□□□□□ -0.6
SF3B3-204ENST00000563739 YWHAHQ04917 246 aaPredicted RBP11.29□□□□□ -0.6
SF3B3-204ENST00000563739 NBR1Q14596 966 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 ME3Q16798 604 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 LRSAM1Q6UWE0 723 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 GTF3C6Q969F1 213 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 ACAP3Q96P50 834 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 MMTAG2Q9BU76 263 aaKnown RBP11.29□□□□□ -0.6
SF3B3-204ENST00000563739 MRPL4Q9BYD3 311 aaKnown RBP11.29□□□□□ -0.6
SF3B3-204ENST00000563739 ATXN3LQ9H3M9 355 aa11.29□□□□□ -0.6
SF3B3-204ENST00000563739 EBF3Q9H4W6 596 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 132.2 ms