RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 NETO1Q8TDF5 533 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 TMEM209Q96SK2 561 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 ZCWPW1Q9H0M4 648 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 RPF1Q9H9Y2 349 aaKnown RBP17.82■□□□□ 0.44
CLN3-208ENST00000561505 ZMYM5Q9UJ78 669 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 RAB23Q9ULC3 237 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 USP18Q9UMW8 372 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 SLC27A5Q9Y2P5 690 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 KIF3AQ9Y496 699 aa17.82■□□□□ 0.44
CLN3-208ENST00000561505 KIF26AQ9ULI4 1882 aaPredicted RBP17.82■□□□□ 0.44
CLN3-208ENST00000561505 VWA3AA6NCI4 1184 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 SOBPA7XYQ1 873 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 HNRNPDLO14979 420 aaKnown RBP17.81■□□□□ 0.44
CLN3-208ENST00000561505 FOXD2O60548 495 aaPredicted RBP17.81■□□□□ 0.44
CLN3-208ENST00000561505 NEFLP07196 543 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 ODC1P11926 461 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 ATF6P18850 670 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 ABCD1P33897 745 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 SOX9P48436 509 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 TUFMP49411 452 aaKnown RBP17.81■□□□□ 0.44
CLN3-208ENST00000561505 PLCB2Q00722 1185 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 DMWDQ09019 674 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 SPEM2Q0P670 501 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 SMARCB1Q12824 385 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 JADE1Q6IE81 842 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 ARMCX5Q6P1M9 558 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 YAF2Q8IY57 180 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 CNTNAP3BQ96NU0 1288 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 CNTNAP3Q9BZ76 1288 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 SLITRK6Q9H5Y7 841 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 TASP1Q9H6P5 420 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 SEMA4GQ9NTN9 838 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 RBM12Q9NTZ6 932 aaKnown RBP17.81■□□□□ 0.44
CLN3-208ENST00000561505 C2CD2Q9Y426 696 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 TSC2P49815 1807 aa17.81■□□□□ 0.44
CLN3-208ENST00000561505 CACNA1BQ00975 2339 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 CCDC163A0A0D9SF12 145 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 SLC38A8A6NNN8 435 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 CHURC1-FNTBB4DL54 471 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 TRAK2O60296 914 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 PRAMEF12O95522 483 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 ADRB1P08588 477 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 GABRR2P28476 465 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 FNTBP49356 437 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 SIM2Q14190 667 aaPredicted RBP17.8■□□□□ 0.44
CLN3-208ENST00000561505 Q6ZS52 159 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 WDR5BQ86VZ2 330 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 C2orf15Q8WU43 125 aaKnown RBP17.8■□□□□ 0.44
CLN3-208ENST00000561505 BICD1Q96G01 975 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 PLIN2Q99541 437 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 FAM83CQ9BQN1 747 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 ATXN3LQ9H3M9 355 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 PARVGQ9HBI0 331 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 C2orf42Q9NWW7 574 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 GTSE1Q9NYZ3 720 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 DSEQ9UL01 958 aa17.8■□□□□ 0.44
CLN3-208ENST00000561505 DCDC2BA2VCK2 349 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 NFICP08651 508 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 KPNA1P52294 538 aaPredicted RBP17.79■□□□□ 0.44
CLN3-208ENST00000561505 ZRSR1Q15695 479 aaKnown RBP17.79■□□□□ 0.44
CLN3-208ENST00000561505 GPR158Q5T848 1215 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 TMEM150AQ86TG1 271 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 GPBP1Q86WP2 473 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 BPIFB1Q8TDL5 484 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 CHFRQ96EP1 664 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 CDK5RAP3Q96JB5 506 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 MSTO1Q9BUK6 570 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 STRA6Q9BX79 667 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 SLC46A2Q9BY10 475 aa17.79■□□□□ 0.44
CLN3-208ENST00000561505 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.79■□□□□ 0.44
CLN3-208ENST00000561505 ANKRD63C9JTQ0 380 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 SOAT2O75908 522 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 F11P03951 625 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 CDC25CP30307 473 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 MATR3P43243 847 aaKnown RBP eCLIP17.78■□□□□ 0.44
CLN3-208ENST00000561505 TMEM132DQ14C87 1099 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 ARHGAP15Q53QZ3 475 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 TMEM196Q5HYL7 178 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 CRELD2Q6UXH1 353 aaPredicted RBP17.78■□□□□ 0.44
CLN3-208ENST00000561505 PRR23CQ6ZRP0 262 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 LRRTM3Q86VH5 581 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 MYCT1Q8N699 235 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 SPPL2BQ8TCT7 592 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 ZFYVE19Q96K21 471 aa17.78■□□□□ 0.44
CLN3-208ENST00000561505 DPYSL4O14531 572 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 TRDMT1O14717 391 aaKnown RBP17.77■□□□□ 0.44
CLN3-208ENST00000561505 TM4SF5O14894 197 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 PPP1R37O75864 691 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 HAPLN1P10915 354 aaPredicted RBP17.77■□□□□ 0.44
CLN3-208ENST00000561505 HMGA1P17096 107 aaKnown RBP17.77■□□□□ 0.44
CLN3-208ENST00000561505 MCM2P49736 904 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 LIMK1P53667 647 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 LPAL2Q16609 132 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 ITPRIPL2Q3MIP1 535 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 C8orf34Q49A92 452 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 NT5DC4Q86YG4 428 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 CMTM8Q8IZV2 173 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 LOXL4Q96JB6 756 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 LPIN3Q9BQK8 851 aa17.77■□□□□ 0.44
CLN3-208ENST00000561505 ANK1P16157 1881 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms