RNA–Protein interactions for RNA: ENST00000561359.1

HERC1-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 3

Gene HERC1, Length 551 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-213ENST00000561359 DSC1Q08554 894 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 LMAN2Q12907 356 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 DRP2Q13474 957 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 NAA30Q147X3 362 aaPredicted RBP5.93□□□□□ -1.46
HERC1-213ENST00000561359 SUZ12Q15022 739 aaKnown RBP5.93□□□□□ -1.46
HERC1-213ENST00000561359 KARSQ15046 597 aaKnown RBP5.93□□□□□ -1.46
HERC1-213ENST00000561359 SEC23AQ15436 765 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 PCSK7Q16549 785 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 OCLNQ16625 522 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 RTP2Q5QGT7 225 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 C16orf46Q6P387 395 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 PKN3Q6P5Z2 889 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 CCNI2Q6ZMN8 369 aaPredicted RBP5.93□□□□□ -1.46
HERC1-213ENST00000561359 MRPL10Q7Z7H8 261 aaKnown RBP5.93□□□□□ -1.46
HERC1-213ENST00000561359 PIP4P1Q86T03 277 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 RALGPS2Q86X27 583 aaPredicted RBP5.93□□□□□ -1.46
HERC1-213ENST00000561359 MFSD6LQ8IWD5 586 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 HDDC3Q8N4P3 179 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 TTC8Q8TAM2 541 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 PIGKQ92643 395 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 RABGGTAQ92696 567 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 SMARCD2Q92925 531 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 EVI5LQ96CN4 794 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 TCEAL4Q96EI5 215 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 HHIPQ96QV1 700 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 GAD1Q99259 594 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 CORO1BQ9BR76 489 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 TTPALQ9BTX7 342 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 NUSAP1Q9BXS6 441 aaKnown RBP5.93□□□□□ -1.46
HERC1-213ENST00000561359 SLITRK6Q9H5Y7 841 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 UBN1Q9NPG3 1134 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 NRBP2Q9NSY0 501 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 GABBR1Q9UBS5 961 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 DDX19BQ9UMR2 479 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 INVSQ9Y283 1065 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 USP20Q9Y2K6 914 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 SAMM50Q9Y512 469 aa5.93□□□□□ -1.46
HERC1-213ENST00000561359 SF3B1O75533 1304 aaKnown RBP eCLIP5.93□□□□□ -1.462e-7■■■■■ 41.4
HERC1-213ENST00000561359 PTPRQQ9UMZ3 2332 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 MTCL1Q9Y4B5 1905 aaKnown RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 WDR27A2RRH5 827 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 MYBPHLA2RUH7 354 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 CAPN8A6NHC0 703 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 HEPACAM2A8MVW5 462 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 FAM229AH3BQW9 127 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 PYCARD-AS1I3L0S3 204 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 ARNTLO00327 626 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 ZNF197O14709 1029 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 RGS9O75916 674 aaPredicted RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 LRG1P02750 347 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 PROCP04070 461 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 NTRK1P04629 796 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 PSAPP07602 524 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 CPB1P15086 417 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 BRD2P25440 801 aaKnown RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 OR1D2P34982 312 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 MLH1P40692 756 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 DHPSP49366 369 aaPredicted RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 ATXN3P54252 364 aaPredicted RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 MFAP1P55081 439 aaKnown RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 NMIQ13287 307 aaPredicted RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 TRIM61Q5EBN2 209 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 FAM171A1Q5VUB5 890 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 PDZD4Q76G19 769 aaPredicted RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 FAM35AQ86V20 835 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 CD163Q86VB7 1156 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 RHPN2Q8IUC4 686 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 CAMKK1Q8N5S9 505 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 PNPLA1Q8N8W4 532 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 PIP4K2CQ8TBX8 421 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 OTUD7AQ8TE49 926 aaPredicted RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 HASPINQ8TF76 798 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 NLRP4Q96MN2 994 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 ZSWIM3Q96MP5 696 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 SAP130Q9H0E3 1048 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 CHMP4BQ9H444 224 aaKnown RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 CNNM2Q9H8M5 875 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 AGPAT5Q9NUQ2 364 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 POLR3BQ9NW08 1133 aaPredicted RBP5.92□□□□□ -1.46
HERC1-213ENST00000561359 PCDHA10Q9Y5I2 948 aa5.92□□□□□ -1.46
HERC1-213ENST00000561359 ABCA12Q86UK0 2595 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 A0A087WV48 116 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 ERICH2A1L162 156 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 UPK3BL1B0FP48 263 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 UPK3BL2E5RIL1 263 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 IPO5O00410 1097 aaKnown RBP5.91□□□□□ -1.46
HERC1-213ENST00000561359 MEIS1O00470 390 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 PRRG1O14668 218 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 IFIT3O14879 490 aaKnown RBP5.91□□□□□ -1.46
HERC1-213ENST00000561359 CHADO15335 359 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 MAP3K6O95382 1288 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 ENGP17813 658 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 MX1P20591 662 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 GRNP28799 593 aaKnown RBP5.91□□□□□ -1.46
HERC1-213ENST00000561359 ELF1P32519 619 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 CHRNA4P43681 627 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 PRKCEQ02156 737 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 SRSF1Q07955 248 aaKnown RBP eCLIP5.91□□□□□ -1.46
HERC1-213ENST00000561359 CYP4F3Q08477 520 aa5.91□□□□□ -1.46
HERC1-213ENST00000561359 SEMA3BQ13214 749 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms