RNA–Protein interactions for RNA: ENST00000560861.1

SNX1-212, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-212ENST00000560861 C3orf58Q8NDZ4 430 aa12.05□□□□□ -0.48
SNX1-212ENST00000560861 ZNF606Q8WXB4 792 aa12.05□□□□□ -0.48
SNX1-212ENST00000560861 TSGA10Q9BZW7 698 aa12.05□□□□□ -0.48
SNX1-212ENST00000560861 LUC7LQ9NQ29 371 aaKnown RBP12.05□□□□□ -0.48
SNX1-212ENST00000560861 MYO1AQ9UBC5 1043 aa12.05□□□□□ -0.48
SNX1-212ENST00000560861 CACNG4Q9UBN1 327 aa12.05□□□□□ -0.48
SNX1-212ENST00000560861 PCDHGC3Q9UN70 934 aa12.05□□□□□ -0.48
SNX1-212ENST00000560861 PTPRSQ13332 1948 aa12.05□□□□□ -0.48
SNX1-212ENST00000560861 A0A0A6YYK5 440 aaPredicted RBP12.04□□□□□ -0.48
SNX1-212ENST00000560861 TRIM43BA6NCK2 446 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 KPNA7A9QM74 516 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 PODXLO00592 558 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 KRT86O43790 486 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 RTN2O75298 545 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 TMEM253P0C7T8 217 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 FGFR1P11362 822 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 BRD2P25440 801 aaKnown RBP12.04□□□□□ -0.48
SNX1-212ENST00000560861 ITGB8P26012 769 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 RFC2P35250 354 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 NDST1P52848 882 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 NOMO3P69849 1222 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 CENPCQ03188 943 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 UPP1Q16831 310 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 ACAD10Q6JQN1 1059 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 TRIM72Q6ZMU5 477 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 UNC93AQ86WB7 457 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 OSTM1Q86WC4 334 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 TXLNBQ8N3L3 684 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 TOP6BLQ8N6T0 577 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 RNF169Q8NCN4 708 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 TRIM43Q96BQ3 446 aaPredicted RBP12.04□□□□□ -0.48
SNX1-212ENST00000560861 PAAF1Q9BRP4 392 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 TMEM106CQ9BVX2 250 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 TMEM39AQ9NV64 488 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 GUCA1BQ9UMX6 200 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 L1RE1Q9UN81 338 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 SNX9Q9Y5X1 595 aa12.04□□□□□ -0.48
SNX1-212ENST00000560861 ANKRD62A6NC57 917 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 O00370 1275 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 GABRDO14764 452 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 THAP12O43422 761 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 KIF5CO60282 957 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 POMCP01189 267 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 WARSP23381 471 aaKnown RBP12.03□□□□□ -0.48
SNX1-212ENST00000560861 CLCNKBP51801 687 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 HADHBP55084 474 aaKnown RBP12.03□□□□□ -0.48
SNX1-212ENST00000560861 GNG11P61952 73 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 PTP4A2Q12974 167 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 NOMO2Q5JPE7 1267 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 GLB1LQ6UWU2 654 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 SYT10Q6XYQ8 523 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 DPH6Q7L8W6 267 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 PHF13Q86YI8 300 aaPredicted RBP12.03□□□□□ -0.48
SNX1-212ENST00000560861 COLGALT2Q8IYK4 626 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 SLC35F6Q8N357 371 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 WDTC1Q8N5D0 677 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 RNF10Q8N5U6 811 aaKnown RBP12.03□□□□□ -0.48
SNX1-212ENST00000560861 ARHGEF26Q96DR7 871 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 DDX27Q96GQ7 796 aaKnown RBP12.03□□□□□ -0.48
SNX1-212ENST00000560861 TMEM176AQ96HP8 235 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 UROC1Q96N76 676 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 R3HCC1Q9Y3T6 440 aaKnown RBP12.03□□□□□ -0.48
SNX1-212ENST00000560861 PAXBP1Q9Y5B6 917 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 CAPN6Q9Y6Q1 641 aa12.03□□□□□ -0.48
SNX1-212ENST00000560861 VWA8A3KMH1 1905 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 CASTOR2A6NHX0 329 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 TMCO5BA8MYB1 307 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 TMEM189-UBE2V1I3L0A0 370 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 HCRTO43612 131 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 MTA2O94776 668 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 DDHD2O94830 711 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 CLSTN1O94985 981 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 LSM8O95777 96 aaKnown RBP12.02□□□□□ -0.49
SNX1-212ENST00000560861 TIMP1P01033 207 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 FTLP02792 175 aaPredicted RBP12.02□□□□□ -0.49
SNX1-212ENST00000560861 CYP1A2P05177 515 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 VDRP11473 427 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 PAX3P23760 479 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 ORC1Q13415 861 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 ZNF394Q53GI3 561 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 ZNF569Q5MCW4 686 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 CNKSR3Q6P9H4 555 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 MON1BQ7L1V2 547 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 ZNF280BQ86YH2 543 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 CRYBG2Q8N1P7 616 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 PDCL2Q8N4E4 241 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 SECISBP2LQ93073 1101 aaKnown RBP12.02□□□□□ -0.49
SNX1-212ENST00000560861 CYFIP2Q96F07 1278 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 SENP8Q96LD8 212 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 CASD1Q96PB1 797 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 MMS19Q96T76 1030 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 NT5C1AQ9BXI3 368 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 THAP2Q9H0W7 228 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 TBC1D13Q9NVG8 400 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 DNAI1Q9UI46 699 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 KIAA1257Q9ULG3 409 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.02□□□□□ -0.49
SNX1-212ENST00000560861 INPP5FQ9Y2H2 1132 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 PCDHGC5Q9Y5F6 944 aa12.02□□□□□ -0.49
SNX1-212ENST00000560861 MACROD2A1Z1Q3 448 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms