RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 DHX58Q96C10 678 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 SEPT5Q99719 369 aaPredicted RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 LPIN3Q9BQK8 851 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 DDX23Q9BUQ8 820 aaKnown RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 BCO2Q9BYV7 579 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 ZCWPW1Q9H0M4 648 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 ZNF334Q9HCZ1 680 aaPredicted RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 LTB4R2Q9NPC1 389 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 OLFML3Q9NRN5 406 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 SPATA6Q9NWH7 488 aaPredicted RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 DSEQ9UL01 958 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 AGAP1Q9UPQ3 857 aa11.04□□□□□ -0.64
LDLR-214ENST00000560628 ZFHX2Q9C0A1 2572 aaPredicted RBP11.04□□□□□ -0.64
LDLR-214ENST00000560628 MYH15Q9Y2K3 1946 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 FRMD3A2A2Y4 597 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 HEPACAM2A8MVW5 462 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 EXTL3O43909 919 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 PPP6R2O75170 966 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 LDHAP00338 332 aaKnown RBP11.03□□□□□ -0.64
LDLR-214ENST00000560628 HSP90AA1P07900 732 aaKnown RBP11.03□□□□□ -0.64
LDLR-214ENST00000560628 SP9P0CG40 484 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 PSMC3P17980 439 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 GARTP22102 1010 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 TARSP26639 723 aaKnown RBP11.03□□□□□ -0.64
LDLR-214ENST00000560628 POLR2BP30876 1174 aaKnown RBP11.03□□□□□ -0.64
LDLR-214ENST00000560628 SV2CQ496J9 727 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 SHC4Q6S5L8 630 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 ZNF852Q6ZMS4 543 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 GAREM2Q75VX8 874 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 BRSK2Q8IWQ3 736 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 ADSSL1Q8N142 457 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 CSGALNACT2Q8N6G5 542 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 CACTINQ8WUQ7 758 aaKnown RBP11.03□□□□□ -0.64
LDLR-214ENST00000560628 RSPRY1Q96DX4 576 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 ATXN3LQ9H3M9 355 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 PDE11AQ9HCR9 933 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 RBAKQ9NYW8 714 aaPredicted RBP11.03□□□□□ -0.64
LDLR-214ENST00000560628 NDRG2Q9UN36 371 aaKnown RBP11.03□□□□□ -0.64
LDLR-214ENST00000560628 NCANO14594 1321 aa11.03□□□□□ -0.64
LDLR-214ENST00000560628 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.02□□□□□ -0.65
LDLR-214ENST00000560628 SHISA7A6NL88 538 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 ZNF263O14978 683 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 CUTAO60888 179 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 ITGB3P05106 788 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 KRT19P08727 400 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 GABRR2P28476 465 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 TUFMP49411 452 aaKnown RBP11.02□□□□□ -0.65
LDLR-214ENST00000560628 ASIC1P78348 528 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 BFSP1Q12934 665 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 ALCAMQ13740 583 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 E2F4Q16254 413 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 GPR158Q5T848 1215 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 LMBRD2Q68DH5 695 aaPredicted RBP11.02□□□□□ -0.65
LDLR-214ENST00000560628 NT5DC4Q86YG4 428 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 ARID3BQ8IVW6 561 aaPredicted RBP11.02□□□□□ -0.65
LDLR-214ENST00000560628 MFSD6LQ8IWD5 586 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 HSCBQ8IWL3 235 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 YAF2Q8IY57 180 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 MAML2Q8IZL2 1156 aaPredicted RBP11.02□□□□□ -0.65
LDLR-214ENST00000560628 PDCL2Q8N4E4 241 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 C1orf127Q8N9H9 656 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 IRF7Q92985 503 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 PSMG2Q969U7 264 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 NELL2Q99435 816 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 OSBPL6Q9BZF3 934 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 GPR88Q9GZN0 384 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 TNMDQ9H2S6 317 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 TMEM206Q9H813 350 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 TRPV4Q9HBA0 871 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 TMLHEQ9NVH6 421 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 KBTBD4Q9NVX7 518 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 ABI2Q9NYB9 513 aaPredicted RBP11.02□□□□□ -0.65
LDLR-214ENST00000560628 ASB3Q9Y575 518 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 SCN1AP35498 2009 aa11.02□□□□□ -0.65
LDLR-214ENST00000560628 NCAM2O15394 837 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 POLR2DO15514 142 aaKnown RBP11.01□□□□□ -0.65
LDLR-214ENST00000560628 LAMTOR5O43504 91 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 HUS1O60921 280 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 YEATS4O95619 227 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 ZSCAN22P10073 491 aaPredicted RBP11.01□□□□□ -0.65
LDLR-214ENST00000560628 HAPLN1P10915 354 aaPredicted RBP11.01□□□□□ -0.65
LDLR-214ENST00000560628 ATF6P18850 670 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 ACAT1P24752 427 aaKnown RBP11.01□□□□□ -0.65
LDLR-214ENST00000560628 CASP1P29466 404 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 HOXD13P35453 343 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 PNPLA4P41247 253 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 GPR15P49685 360 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 RBP5P82980 135 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 CYP4F8P98187 520 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 AMPD3Q01432 767 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 CSTF1Q05048 431 aaKnown RBP11.01□□□□□ -0.65
LDLR-214ENST00000560628 FZD5Q13467 585 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 VEPH1Q14D04 833 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 TAF12Q16514 161 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 STXBP4Q6ZWJ1 553 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 ITIH5Q86UX2 942 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 CBWD2Q8IUF1 395 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 DCP1BQ8IZD4 617 aaKnown RBP11.01□□□□□ -0.65
LDLR-214ENST00000560628 GPD1LQ8N335 351 aa11.01□□□□□ -0.65
LDLR-214ENST00000560628 IQUBQ8NA54 791 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms