RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 GABBR2O75899 941 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 HMGN1P05114 100 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 ITGAXP20702 1163 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 SNX16P57768 344 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 MAPRE1Q15691 268 aaKnown RBP8.88□□□□□ -0.99
USP3-211ENST00000559257 PRR23CQ6ZRP0 262 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 ARPINQ7Z6K5 226 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 ZNF677Q86XU0 584 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 SLC7A3Q8WY07 619 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 HSPH1Q92598 858 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 TAMM41Q96BW9 452 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 SERPINB12Q96P63 405 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 YME1L1Q96TA2 773 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 HOXD1Q9GZZ0 328 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 LACRTQ9GZZ8 138 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 USP40Q9NVE5 1235 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 MRPL39Q9NYK5 338 aaKnown RBP8.88□□□□□ -0.99
USP3-211ENST00000559257 HMG20BQ9P0W2 317 aa8.88□□□□□ -0.99
USP3-211ENST00000559257 LIMA1Q9UHB6 759 aaKnown RBP8.88□□□□□ -0.99
USP3-211ENST00000559257 SIGLEC1Q9BZZ2 1709 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 MROH7-TTC4A0A0A0MT08 1334 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 F8W810 466 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 H3BNX3 289 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 BUD23O43709 281 aaKnown RBP8.87□□□□□ -0.99
USP3-211ENST00000559257 PDE8AO60658 829 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 KLHL41O60662 606 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 ECDO95905 644 aaPredicted RBP8.87□□□□□ -0.99
USP3-211ENST00000559257 CAPN1P07384 714 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 INHBBP09529 407 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 ZNF3P17036 446 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 HADHAP40939 763 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 SLC9A3P48764 834 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 SCNN1DP51172 638 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 SSTP61278 116 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 ERVK-9P63128 1117 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 FKBP4Q02790 459 aaKnown RBP eCLIP8.87□□□□□ -0.99
USP3-211ENST00000559257 SPAG1Q07617 926 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 CD300CQ08708 224 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 PPP2R5CQ13362 524 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 KCNT1Q5JUK3 1230 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 SLC9C2Q5TAH2 1124 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 NANOGP8Q6NSW7 305 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 NFRKBQ6P4R8 1299 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 RFWD3Q6PCD5 774 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 RASSF3Q86WH2 238 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 FLCNQ8NFG4 579 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 HPS1Q92902 700 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 TRIM47Q96LD4 638 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 NLRP4Q96MN2 994 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 CADM1Q9BY67 442 aaKnown RBP8.87□□□□□ -0.99
USP3-211ENST00000559257 RHOBTB2Q9BYZ6 727 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 TXLNGYQ9BZA5 131 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 PAIP1Q9H074 479 aaKnown RBP8.87□□□□□ -0.99
USP3-211ENST00000559257 GGA3Q9NZ52 723 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 EPS15L1Q9UBC2 864 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 NUP50Q9UKX7 468 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 ARHGAP26Q9UNA1 814 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 N4BP2Q86UW6 1770 aaPredicted RBP8.87□□□□□ -0.99
USP3-211ENST00000559257 PTPRMP28827 1452 aa8.87□□□□□ -0.99
USP3-211ENST00000559257 A0A087WZG4 1122 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 CAPN14A8MX76 684 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 RSPH10B2B2RC85 870 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 CES2O00748 559 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 FYB1O15117 783 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 FOXP2O15409 715 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 TLR3O15455 904 aaKnown RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 RGS16O15492 202 aaPredicted RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 RAD51CO43502 376 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 DENRO43583 198 aaKnown RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 PHF2O75151 1096 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 PPP6R2O75170 966 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 TNFAIP8O95379 198 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 RSPH10BP0C881 870 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 RAP1GDS1P52306 607 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 ARHGDIBP52566 201 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 AP2S1P53680 142 aaPredicted RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 RCAN1P53805 252 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 HSD17B7P56937 341 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 BPIFB3P59826 476 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 MDM2Q00987 491 aaPredicted RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 PTH1RQ03431 593 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 KDSRQ06136 332 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 GFPT1Q06210 699 aaPredicted RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 HSP90AA4PQ58FG1 418 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 ZBTB41Q5SVQ8 909 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 ARMC4Q5T2S8 1044 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 TAS2R42Q7RTR8 314 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 VGLL2Q8N8G2 317 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 LHFPL5Q8TAF8 219 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 MARVELD3Q96A59 401 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 SLC39A13Q96H72 371 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 PAWRQ96IZ0 340 aaKnown RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 TSNARE1Q96NA8 513 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 OPALINQ96PE5 141 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 BTBD10Q9BSF8 475 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 PABPC3Q9H361 631 aaKnown RBP8.86□□□□□ -0.99
USP3-211ENST00000559257 ATP13A2Q9NQ11 1180 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 SNRKQ9NRH2 765 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 KIF17Q9P2E2 1029 aa8.86□□□□□ -0.99
USP3-211ENST00000559257 MBD2Q9UBB5 411 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms