RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CYP1B1Q16678 543 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 ZNF792Q3KQV3 632 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 KCNT1Q5JUK3 1230 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 RHOT1Q8IXI2 618 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 EMC1Q8N766 993 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 UBR7Q8N806 425 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 MDM1Q8TC05 714 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 BRI3BPQ8WY22 251 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 TRIM11Q96F44 468 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 MS4A4AQ96JQ5 239 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 FAM49AQ9H0Q0 323 aaPredicted RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 TUT1Q9H6E5 874 aaKnown RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 LRRC19Q9H756 370 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 LAMA2P24043 3122 aaKnown RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 HTTP42858 3142 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 FOXO6A8MYZ6 492 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 HMGB1P1B2RPK0 211 aaPredicted RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 ADCY6O43306 1168 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 ACSL3O95573 720 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 SLC1A1P43005 524 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 MTMR3Q13615 1198 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 KIZQ2M2Z5 673 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 DNAJC24Q6P3W2 148 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 ERICH1Q86X53 443 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 KIAA0319LQ8IZA0 1049 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 KCNN1Q92952 543 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 L3MBTL3Q96JM7 780 aaPredicted RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 PLVAPQ9BX97 442 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 OSBPL8Q9BZF1 889 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 PABPC3Q9H361 631 aaKnown RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 C10orf88Q9H8K7 445 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.26□□□□□ -0.613e-7■■■■■ 27.8
CUX1-217ENST00000558836 SAE1Q9UBE0 346 aaPredicted RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.26□□□□□ -0.61
CUX1-217ENST00000558836 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 KAT6AQ92794 2004 aa11.26□□□□□ -0.61
CUX1-217ENST00000558836 GLTPD2A6NH11 291 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 TRIM66O15016 1216 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 SMPD1P17405 629 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 LSP1P33241 339 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 RFC1P35251 1148 aaPredicted RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 C1QBPQ07021 282 aaKnown RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 LAMC2Q13753 1193 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 CLUL1Q15846 466 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 DENND2CQ68D51 928 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 LRIG3Q6UXM1 1119 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 KDM7AQ6ZMT4 941 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 TRIM72Q6ZMU5 477 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 GLIS1Q8NBF1 620 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 EPS8L3Q8TE67 593 aaKnown RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 C16orf70Q9BSU1 422 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 DCLK3Q9C098 648 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 SETD4Q9NVD3 440 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 TNFSF13BQ9Y275 285 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 HES2Q9Y543 173 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 TMEM191CA6NGB0 347 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 GAS2O43903 313 aaKnown RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 PPFIA4O75335 1185 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 GH1P01241 217 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 ZSCAN5DPP0CG00 497 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 POLR2BP30876 1174 aaKnown RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 ADCY8P40145 1251 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 SLC26A2P50443 739 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 IFI35P80217 286 aaPredicted RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 SKOR1P84550 965 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 CALCOCO2Q13137 446 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 AMHR2Q16671 573 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 SLC10A6Q3KNW5 377 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 PTPN20Q4JDL3 420 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 CCDC38Q502W7 563 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 ZNF667Q5HYK9 610 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 HP1BP3Q5SSJ5 553 aaPredicted RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 MFSD7Q6UXD7 560 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 TMEM35BQ8NCS4 154 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 JOSD2Q8TAC2 188 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 UBA3Q8TBC4 463 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 RAPGEF5Q92565 580 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 PDZD7Q9H5P4 517 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 ZWILCHQ9H900 591 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 PNMA3Q9UL41 463 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 B4GALT4O60513 344 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 IVLP07476 585 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 ETS1P14921 441 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 PHKA2P46019 1235 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 FNTAP49354 379 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 AP3M2P53677 418 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 DRG2P55039 364 aaKnown RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 DYNLT1P63172 113 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 GSTA5Q7RTV2 222 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 TAB3Q8N5C8 712 aaPredicted RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 ART4Q93070 314 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 PTPN18Q99952 460 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 JPH2Q9BR39 696 aaPredicted RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 CWC15Q9P013 229 aaKnown RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 MTRF1LQ9UGC7 380 aaKnown RBP11.25□□□□□ -0.61
CUX1-217ENST00000558836 SCINQ9Y6U3 715 aa11.25□□□□□ -0.61
CUX1-217ENST00000558836 TRIP11Q15643 1979 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 NDUFAB1O14561 156 aa11.24□□□□□ -0.61
CUX1-217ENST00000558836 RPS6KA5O75582 802 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms