RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 ATXN3LQ9H3M9 355 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 DPP3Q9NY33 737 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 HSFX1Q9UBD0 423 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 SRPRBQ9Y5M8 271 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 STYXL1Q9Y6J8 313 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 OTOGLQ3ZCN5 2332 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 NCANO14594 1321 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 DMXL1Q9Y485 3027 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 DPYSL4O14531 572 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 CHADO15335 359 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 SOAT2O75908 522 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 GABRR2P28476 465 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 TUFMP49411 452 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 POU5F1Q01860 360 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 CEBPZQ03701 1054 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 POSTNQ15063 836 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 ARHGAP15Q53QZ3 475 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 STXBP5Q5T5C0 1151 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 TSSK4Q6SA08 328 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 CRELD2Q6UXH1 353 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 SV2BQ7L1I2 683 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 ARID3BQ8IVW6 561 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 ZNF687Q8N1G0 1237 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 DCLK2Q8N568 766 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 TTC9BQ8N6N2 239 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 CLIC6Q96NY7 704 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 SEPT5Q99719 369 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 PYM1Q9BRP8 204 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 ZCWPW1Q9H0M4 648 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 IKZF4Q9H2S9 585 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 MRPL44Q9H9J2 332 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 LMAN1LQ9HAT1 526 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 PRMT8Q9NR22 394 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 ZSCAN32Q9NX65 697 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 SEL1LQ9UBV2 794 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 FBXO2Q9UK22 296 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 EXOC7Q9UPT5 735 aa11.97□□□□□ -0.49
CCDC88C-213ENST00000557455 MYMKA6NI61 221 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 TULP1O00294 542 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 PPP1R37O75864 691 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 IL18RAPO95256 599 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 GAP43P17677 238 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 SYT1P21579 422 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 CCNE1P24864 410 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 ADSSP30520 456 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 FCHO2Q0JRZ9 810 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 RESTQ13127 1097 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 PPP2R5DQ14738 602 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 VEPH1Q14D04 833 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 TAF12Q16514 161 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 MGAT5BQ3V5L5 792 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 SV2CQ496J9 727 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 GPR158Q5T848 1215 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 FAM173BQ6P4H8 233 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 GAREM2Q75VX8 874 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 NT5DC4Q86YG4 428 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 GPIHBP1Q8IV16 184 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 EFCAB13Q8IY85 973 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 ZBTB44Q8NCP5 570 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 C2orf15Q8WU43 125 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 NELL1Q92832 810 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 RSPRY1Q96DX4 576 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 ZNF560Q96MR9 790 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 GCNAQ96QF7 691 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 ACCSQ96QU6 501 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 IER2Q9BTL4 223 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 STRA6Q9BX79 667 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 FAM126AQ9BYI3 521 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 CHRDQ9H2X0 955 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 TBC1D7Q9P0N9 293 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 NCDNQ9UBB6 729 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 GTF3C3Q9Y5Q9 886 aa11.96□□□□□ -0.49
CCDC88C-213ENST00000557455 OBSL1O75147 1896 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 SLC38A8A6NNN8 435 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 KPNA7A9QM74 516 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 ARNTLO00327 626 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 LILRB5O75023 590 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 GCNT3O95395 438 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 LDHAP00338 332 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 IDEP14735 1019 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 CDR1P51861 262 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 KPNA1P52294 538 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 MLLT6P55198 1093 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 KCNA1Q09470 495 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 SMARCB1Q12824 385 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 L1TD1Q5T7N2 865 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 WSCD1Q658N2 575 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 C1orf228Q6PIY5 440 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 CCDC73Q6ZRK6 1079 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 DCP1BQ8IZD4 617 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 SPPL2BQ8TCT7 592 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 SECISBP2LQ93073 1101 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 DNAJC19Q96DA6 116 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 RMDN1Q96DB5 314 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 MSANTD3Q96H12 275 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 LPIN3Q9BQK8 851 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 FAM213AQ9BRX8 229 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 MKNK1Q9BUB5 465 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 EPC1Q9H2F5 836 aa11.95□□□□□ -0.5
CCDC88C-213ENST00000557455 TASP1Q9H6P5 420 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms