RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 CD320Q9NPF0 282 aa13.42□□□□□ -0.26
SLIRP-209ENST00000557342 CLUHO75153 1309 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 GOLGA6L22H0YM25 854 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 CCL16O15467 120 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 AKAP3O75969 853 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 STAU1O95793 577 aaKnown RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 CST3P01034 146 aaPredicted RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 C4BPAP04003 597 aaKnown RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 FAM163BP0C2L3 166 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 EPB41P11171 864 aaKnown RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 LHX1P48742 406 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 FKBP3Q00688 224 aaKnown RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 TSPY1Q01534 308 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 PLD1Q13393 1074 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 MORC3Q14149 939 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 ISM2Q6H9L7 571 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 DCP1BQ8IZD4 617 aaKnown RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 ELMOD1Q8N336 334 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 PDCL2Q8N4E4 241 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 PLEKHO2Q8TD55 490 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 C2orf15Q8WU43 125 aaKnown RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 ZCWPW1Q9H0M4 648 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 DDX43Q9NXZ2 648 aaKnown RBP13.41□□□□□ -0.26
SLIRP-209ENST00000557342 KIAA1468Q9P260 1216 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 HSFX1Q9UBD0 423 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 L1RE1Q9UN81 338 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 POLIQ9UNA4 740 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 INSL5Q9Y5Q6 135 aa13.41□□□□□ -0.26
SLIRP-209ENST00000557342 DOCK8Q8NF50 2099 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 BICDL2A1A5D9 508 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 SEC24AO95486 1093 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 OR4Q2P0C623 313 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 ALADP13716 330 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 CCNE1P24864 410 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 TNNC1P63316 161 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 TDRD10Q5VZ19 366 aaKnown RBP13.4□□□□□ -0.26
SLIRP-209ENST00000557342 ANKRD40Q6AI12 368 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 FOXR2Q6PJQ5 311 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 RNF135Q8IUD6 432 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 ADGRF2Q8IZF7 708 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 ZDHHC14Q8IZN3 488 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 OR10T2Q8NGX3 314 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 PGLYRP2Q96PD5 576 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 MMS19Q96T76 1030 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 RTP3Q9BQQ7 232 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 ACBD6Q9BR61 282 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 VRTNQ9H8Y1 702 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 NOTCH4Q99466 2003 aa13.4□□□□□ -0.26
SLIRP-209ENST00000557342 MYO10Q9HD67 2058 aa13.4□□□□□ -0.27
SLIRP-209ENST00000557342 MTMR11A4FU01 709 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 C2CD4DB7Z1M9 353 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 BIN1O00499 593 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 GABRDO14764 452 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 SLC16A3O15427 465 aaKnown RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 STX10O60499 249 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 CLSTN1O94985 981 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 PTPN2P17706 415 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 WARSP23381 471 aaKnown RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 SP100P23497 879 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 FSHRP23945 695 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 PCSK1P29120 753 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 GTF2H1P32780 548 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 ALDH1A3P47895 512 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 TUFMP49411 452 aaKnown RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 MYL6P60660 151 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 DLG4P78352 724 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 NCOA4Q13772 614 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 CAMK4Q16566 473 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 NFE2Q16621 373 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 SOWAHAQ2M3V2 549 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 WDR72Q3MJ13 1102 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 ZACNQ401N2 412 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 SLC39A12Q504Y0 691 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 SCARA3Q6AZY7 606 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 IQCEQ6IPM2 695 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 LIMS2Q7Z4I7 341 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 GRASPQ7Z6J2 395 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 ZC3H3Q8IXZ2 948 aaKnown RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 FEZF2Q8TBJ5 459 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 SPPL2BQ8TCT7 592 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 ZNF512Q96ME7 567 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 TMEM209Q96SK2 561 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 CLSTN2Q9H4D0 955 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 LMBRD1Q9NUN5 540 aa13.39□□□□□ -0.27
SLIRP-209ENST00000557342 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 ZFP37Q9Y6Q3 630 aaPredicted RBP13.39□□□□□ -0.27
SLIRP-209ENST00000557342 TRIM49BA6NDI0 452 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 PPP1R3GB7ZBB8 358 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 PI4K2BG5E9Z4 385 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 TACC1O75410 805 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 P4HA1P13674 534 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 CD44P16070 742 aaKnown RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 GBP2P32456 591 aaPredicted RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 PMS1P54277 932 aaKnown RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 EPHB3P54753 998 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 MCCD1P59942 119 aaPredicted RBP13.38□□□□□ -0.27
SLIRP-209ENST00000557342 TWF1Q12792 350 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 DUSP4Q13115 394 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 SGSM1Q2NKQ1 1148 aa13.38□□□□□ -0.27
SLIRP-209ENST00000557342 ZNF699Q32M78 642 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms