RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ITPRIPL2	Q3MIP1	535 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	DTHD1	Q6ZMT9	781 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	KCNK18	Q7Z418	384 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	TSPAN18	Q96SJ8	248 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	TMEM209	Q96SK2	561 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	LLPH	Q9BRT6	129 aa	Known RBP	13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	HAPLN2	Q9GZV7	340 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	GKN1	Q9NS71	199 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	LIMCH1	Q9UPQ0	1083 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	CFAP47	Q6ZTR5	3102 aa		13.75	□□□□□ -0.21
SHMT2-223	ENST00000556689	COL4A2	P08572	1712 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	LAD1	O00515	517 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	RPP40	O75818	363 aa	Known RBP	13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	PAX3	P23760	479 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	PML	P29590	882 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	RAP1GAP	P47736	663 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	PXN	P49023	591 aa	Predicted RBP	13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	MCM2	P49736	904 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	LILRA4	P59901	499 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	SHC2	P98077	582 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	PPP2R3A	Q06190	1150 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	GRSF1	Q12849	480 aa	Known RBP eCLIP	13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	ZRSR1	Q15695	479 aa	Known RBP	13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	IL17A	Q16552	155 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	KBTBD6	Q86V97	674 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	CCDC83	Q8IWF9	413 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	TTC9B	Q8N6N2	239 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	SYT2	Q8N9I0	419 aa	Predicted RBP	13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	FAM184A	Q8NB25	1140 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	BICD1	Q96G01	975 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	MMTAG2	Q9BU76	263 aa	Known RBP	13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	RXFP3	Q9NSD7	469 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	SLC8A2	Q9UPR5	921 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689	PCDHB6	Q9Y5E3	794 aa		13.74	□□□□□ -0.21
SHMT2-223	ENST00000556689		H0YCG3	227 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	EPN2	O95208	641 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	PRAMEF12	O95522	483 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	CCDC192	P0DO97	292 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	ODC1	P11926	461 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	U2AF2	P26368	475 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	CDC25C	P30307	473 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	PRPH	P41219	470 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	TNFSF9	P41273	254 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	TOB1	P50616	345 aa	Predicted RBP	13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	GUCY2F	P51841	1108 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	HMGN5	P82970	282 aa	Known RBP	13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	VEPH1	Q14D04	833 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	TAF12	Q16514	161 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	MGAT5B	Q3V5L5	792 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	STPG1	Q5TH74	334 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	SPATA1	Q5VX52	437 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	KCTD17	Q8N5Z5	321 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	SENP8	Q96LD8	212 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	GCNA	Q96QF7	691 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	SEPT5	Q99719	369 aa	Predicted RBP	13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	LPIN3	Q9BQK8	851 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	SLC46A2	Q9BY10	475 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	RPF1	Q9H9Y2	349 aa	Known RBP	13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	LARS	Q9P2J5	1176 aa	Known RBP	13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	ZMYM5	Q9UJ78	669 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	PCDHGA5	Q9Y5G8	931 aa		13.73	□□□□□ -0.21
SHMT2-223	ENST00000556689	AKAP3	O75969	853 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	ADRB2	P07550	413 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	LIG4	P49917	911 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	CYP4F8	P98187	520 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	AMPD2	Q01433	879 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	RUNX3	Q13761	415 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	ENOX2	Q16206	610 aa	Known RBP	13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	SLC39A12	Q504Y0	691 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	TMEM196	Q5HYL7	178 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	PLA2G2C	Q5R387	149 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	PKN3	Q6P5Z2	889 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	CD302	Q8IX05	232 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	CMTM8	Q8IZV2	173 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	CAMKK1	Q8N5S9	505 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	FAM212A	Q96EL1	285 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	ZC3H10	Q96K80	434 aa	Known RBP	13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	FAM83C	Q9BQN1	747 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	LSM14B	Q9BX40	385 aa	Known RBP	13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	SMG9	Q9H0W8	520 aa	Known RBP	13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	IL21	Q9HBE4	155 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	KCND2	Q9NZV8	630 aa		13.72	□□□□□ -0.21
SHMT2-223	ENST00000556689	PIR	O00625	290 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	TRDMT1	O14717	391 aa	Known RBP	13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	PPEF2	O14830	753 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	OGT	O15294	1046 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	EIF5B	O60841	1220 aa	Known RBP	13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	CYP11A1	P05108	521 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	SLC12A3	P55017	1021 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	HYI	Q5T013	277 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	C9orf57	Q5W0N0	161 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	FSTL4	Q6MZW2	842 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	METTL23	Q86XA0	190 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	THEM5	Q8N1Q8	247 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	OR10T2	Q8NGX3	314 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	GIPC2	Q8TF65	315 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	C2orf15	Q8WU43	125 aa	Known RBP	13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	PLIN2	Q99541	437 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	ZCWPW1	Q9H0M4	648 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	VPS45	Q9NRW7	570 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms