RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	IGFBP6	P24592	240 aa	Predicted RBP	13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	GNL1	P36915	607 aa	Predicted RBP	13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	PBX1	P40424	430 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	USP8	P40818	1118 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	APBA1	Q02410	837 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	PTPN21	Q16825	1174 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	PTPRO	Q16827	1216 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	CTXN3	Q4LDR2	81 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	FIGN	Q5HY92	759 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	VARS2	Q5ST30	1063 aa	Known RBP	13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	SMYD5	Q6GMV2	418 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	IQCE	Q6IPM2	695 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	PDE12	Q6L8Q7	609 aa	Known RBP	13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	CD300LG	Q6UXG3	332 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	TMC7	Q7Z402	723 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	MICAL1	Q8TDZ2	1067 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	POF1B	Q8WVV4	589 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	RIN2	Q8WYP3	895 aa	Predicted RBP	13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	TNIP3	Q96KP6	325 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	B3GALT6	Q96L58	329 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	TCF25	Q9BQ70	676 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	GAN	Q9H2C0	597 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	NLRC4	Q9NPP4	1024 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	APOBEC3C	Q9NRW3	190 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	BARX2	Q9UMQ3	279 aa	Predicted RBP	13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	PCDHB4	Q9Y5E5	795 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	FHOD1	Q9Y613	1164 aa		13.37	□□□□□ -0.27
ABCD4-223	ENST00000555904	TRIP11	Q15643	1979 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	OAZ2	O95190	189 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	CCDC172	P0C7W6	258 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	CDC25B	P30305	580 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	CDH8	P55286	799 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	TSPY1	Q01534	308 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	DSG1	Q02413	1049 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	INCA1	Q0VD86	236 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	SMC1A	Q14683	1233 aa	Known RBP	13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	PSMD5	Q16401	504 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	RTP2	Q5QGT7	225 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	GJB7	Q6PEY0	223 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	TMEM270	Q6UE05	265 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	TMC6	Q7Z403	805 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	UNC93A	Q86WB7	457 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	GPR65	Q8IYL9	337 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	RNF168	Q8IYW5	571 aa	Predicted RBP	13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	KBTBD7	Q8WVZ9	684 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	PIK3R5	Q8WYR1	880 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	MRPL45	Q9BRJ2	306 aa	Known RBP	13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	VN1R3	Q9BXE9	311 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	NT5C1A	Q9BXI3	368 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	EMILIN2	Q9BXX0	1053 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	STK33	Q9BYT3	514 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	EDEM3	Q9BZQ6	932 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	LMAN2L	Q9H0V9	348 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	ZBP1	Q9H171	429 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	NUCKS1	Q9H1E3	243 aa	Known RBP	13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	ZNF576	Q9H609	170 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	NGRN	Q9NPE2	291 aa	Known RBP	13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	CHST7	Q9NS84	486 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	DDX43	Q9NXZ2	648 aa	Known RBP	13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	PDE4DIP	Q5VU43	2346 aa		13.36	□□□□□ -0.27
ABCD4-223	ENST00000555904	KIAA1671	Q9BY89	1806 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904		A0A1W2PQJ5	194 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	OR6C75	A6NL08	312 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904		F8VZ95	297 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	GABRD	O14764	452 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	CILP	O75339	1184 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	NOL4	O94818	638 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	CSPG5	O95196	566 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	EFEMP2	O95967	443 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	CTSA	P10619	480 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	CPB1	P15086	417 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	STAT1	P42224	750 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	NDST1	P52848	882 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	DRAP1	Q14919	205 aa	Predicted RBP	13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	MAPRE1	Q15691	268 aa	Known RBP	13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	TSR1	Q2NL82	804 aa	Known RBP	13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	ZNF697	Q5TEC3	545 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	TAS1R1	Q7RTX1	841 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	LIMS2	Q7Z4I7	341 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	SPRED2	Q7Z698	418 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	SPPL3	Q8TCT6	385 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	SHC3	Q92529	594 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	KAT5	Q92993	513 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	KREMEN1	Q96MU8	473 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	ACBD6	Q9BR61	282 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	SDCBP2	Q9H190	292 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	CDH9	Q9ULB4	789 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	MYO6	Q9UM54	1294 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	STXBP5L	Q9Y2K9	1186 aa		13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	LUC7L2	Q9Y383	392 aa	Known RBP	13.35	□□□□□ -0.27
ABCD4-223	ENST00000555904	GBF1	Q92538	1859 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	EPHB6	O15197	1021 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	GRM6	O15303	877 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	CXCL14	O95715	111 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	PDGFRB	P09619	1106 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	SOX5	P35711	763 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	BPIFB4	P59827	614 aa		13.34	□□□□□ -0.27
ABCD4-223	ENST00000555904	PTPN14	Q15678	1187 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms