RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 PSMC5P62195 406 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 PPP2R5CQ13362 524 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 MAPK8IP2Q13387 824 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-216ENST00000554975 NFIL3Q16649 462 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 XKR3Q5GH77 459 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 TWF2Q6IBS0 349 aaKnown RBP11.98□□□□□ -0.49
SHMT2-216ENST00000554975 PDXDC1Q6P996 788 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 PARM1Q6UWI2 310 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 GLB1LQ6UWU2 654 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 AGMOQ6ZNB7 445 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 TRIM59Q8IWR1 403 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 MSANTD4Q8NCY6 345 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 GOLGA5Q8TBA6 731 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 NELL1Q92832 810 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 SECISBP2LQ93073 1101 aaKnown RBP11.98□□□□□ -0.49
SHMT2-216ENST00000554975 RHOBTB2Q9BYZ6 727 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 MMRN2Q9H8L6 949 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 NHEJ1Q9H9Q4 299 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-216ENST00000554975 MRPL17Q9NRX2 175 aaKnown RBP11.98□□□□□ -0.49
SHMT2-216ENST00000554975 FAM105AQ9NUU6 356 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 MARCH5Q9NX47 278 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 VAV3Q9UKW4 847 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 ODF2LQ9ULJ1 636 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 TRAF3IP3Q9Y228 551 aa11.98□□□□□ -0.49
SHMT2-216ENST00000554975 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.98□□□□□ -0.49
SHMT2-216ENST00000554975 A0A087WZ62 844 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 TMEM150BA6NC51 233 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 E9PMD0 336 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 EML1O00423 815 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 NRP1O14786 923 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 FANCGO15287 622 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 AKR1B10O60218 316 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 DKC1O60832 514 aaKnown RBP eCLIP11.97□□□□□ -0.49
SHMT2-216ENST00000554975 MED24O75448 989 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 FAM13AO94988 1023 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 PAPLNO95428 1278 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 GLUD1P00367 558 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 SOD2P04179 222 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 EPB41P11171 864 aaKnown RBP11.97□□□□□ -0.49
SHMT2-216ENST00000554975 KIF11P52732 1056 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 UBXN2BQ14CS0 331 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 MLF2Q15773 248 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-216ENST00000554975 LPAL2Q16609 132 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 WDR59Q6PJI9 974 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 HNRNPLLQ8WVV9 542 aaKnown RBP11.97□□□□□ -0.49
SHMT2-216ENST00000554975 ATRIPQ8WXE1 791 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 RPS6KC1Q96S38 1066 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 CHP1Q99653 195 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 SH2D3AQ9BRG2 576 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 FDXACB1Q9BRP7 624 aaPredicted RBP11.97□□□□□ -0.49
SHMT2-216ENST00000554975 MKNK1Q9BUB5 465 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 HERC2P3Q9BVR0 1158 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 TRAIPQ9BWF2 469 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 BCO2Q9BYV7 579 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 ZSCAN32Q9NX65 697 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 GUCA1BQ9UMX6 200 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 PIN4Q9Y237 131 aaKnown RBP11.97□□□□□ -0.49
SHMT2-216ENST00000554975 VWA8A3KMH1 1905 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 ZZEF1O43149 2961 aa11.97□□□□□ -0.49
SHMT2-216ENST00000554975 SPAG17Q6Q759 2223 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 ANKRD11Q6UB99 2663 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 IGF2RP11717 2491 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 GREB1Q4ZG55 1949 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 GTPBP10A4D1E9 387 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 FAM170BA6NMN3 283 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 PJA2O43164 708 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 EFEMP2O95967 443 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 SERPING1P05155 500 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 URODP06132 367 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 P4HBP07237 508 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 ADH1AP07327 375 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 TCP1P17987 556 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 TARSP26639 723 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 QARSP47897 775 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 NTHL1P78549 312 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 AMPD2Q01433 879 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 CYP4A11Q02928 519 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 SPEM2Q0P670 501 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 NAA30Q147X3 362 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 EPHA7Q15375 998 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 KNOP1Q1ED39 458 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 TDRD12Q587J7 1177 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 C10orf76Q5T2E6 689 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 SFMBT2Q5VUG0 894 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 PAPD7Q5XG87 772 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 PLA2G4FQ68DD2 849 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 B3GNT9Q6UX72 402 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 TRAPPC11Q7Z392 1133 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 CATSPER3Q86XQ3 398 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 PALB2Q86YC2 1186 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 GLYCTKQ8IVS8 523 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 RNF168Q8IYW5 571 aaPredicted RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 B3GALT6Q96L58 329 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 EIF2AK1Q9BQI3 630 aaKnown RBP11.96□□□□□ -0.49
SHMT2-216ENST00000554975 LXNQ9BS40 222 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 TIPINQ9BVW5 301 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 KCTD10Q9H3F6 313 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 LTB4R2Q9NPC1 389 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 PLCB1Q9NQ66 1216 aa11.96□□□□□ -0.49
SHMT2-216ENST00000554975 CHST12Q9NRB3 414 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms